Construct: ORF TRCN0000466801

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000943.1_s317c1
Derived from:
ccsbBroadEn_12532
DNA Barcode:
TGCCTATACCACAGTATAAGGTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERI3 (79033)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466801
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79033 ERI3 ERI1 exoribonuclease family... NM_001301701.1 80% 80% 1_96del
2 human 79033 ERI3 ERI1 exoribonuclease family... XM_006710891.3 80% 80% 1_96del
3 human 79033 ERI3 ERI1 exoribonuclease family... XM_017002305.1 80% 80% 1_96del
4 human 79033 ERI3 ERI1 exoribonuclease family... XM_017002304.2 58.4% 58.4% 1_273del
5 human 79033 ERI3 ERI1 exoribonuclease family... NM_001301698.2 49.4% 49.4% 1_393del
6 human 79033 ERI3 ERI1 exoribonuclease family... NM_001301699.1 49.4% 49.4% 1_393del
7 human 79033 ERI3 ERI1 exoribonuclease family... XM_017002303.2 49.4% 49.4% 1_393del
8 human 79033 ERI3 ERI1 exoribonuclease family... XM_024449712.1 49.4% 49.4% 1_393del
9 human 79033 ERI3 ERI1 exoribonuclease family... XM_017002301.1 38.2% 38.2% 1_621del
10 human 79033 ERI3 ERI1 exoribonuclease family... NM_024066.3 37.9% 37.9% 1_627del
11 human 79033 ERI3 ERI1 exoribonuclease family... NM_001301700.1 29.7% 26.6% 1_393del;596_597ins100;624_625ins53
12 human 79033 ERI3 ERI1 exoribonuclease family... XM_017002302.1 29.7% 26.6% 1_393del;596_597ins100;624_625ins53
13 human 79033 ERI3 ERI1 exoribonuclease family... XM_005271186.2 22.8% 20.4% 1_627del;830_831ins100;858_859ins53
14 mouse 140546 Eri3 exoribonuclease 3 XM_017319972.2 94% 99.2% (many diffs)
15 mouse 140546 Eri3 exoribonuclease 3 XM_030253209.1 94% 99.2% (many diffs)
16 mouse 140546 Eri3 exoribonuclease 3 NM_001285902.1 75.2% 79.3% (many diffs)
17 mouse 140546 Eri3 exoribonuclease 3 XM_030253206.1 75.2% 79.3% (many diffs)
18 mouse 140546 Eri3 exoribonuclease 3 XM_030253205.1 66.1% 69.7% (many diffs)
19 mouse 140546 Eri3 exoribonuclease 3 XM_017319970.2 57.9% 51.9% (many diffs)
20 mouse 140546 Eri3 exoribonuclease 3 XM_017319971.1 57.9% 51.9% (many diffs)
21 mouse 140546 Eri3 exoribonuclease 3 XM_030253196.1 54.9% 57.9% (many diffs)
22 mouse 140546 Eri3 exoribonuclease 3 NM_001285901.1 46.4% 49% (many diffs)
23 mouse 140546 Eri3 exoribonuclease 3 NM_001356404.1 46.4% 49% (many diffs)
24 mouse 140546 Eri3 exoribonuclease 3 XM_030253198.1 46.4% 49% (many diffs)
25 mouse 140546 Eri3 exoribonuclease 3 XM_030253202.1 46.4% 49% (many diffs)
26 mouse 140546 Eri3 exoribonuclease 3 XM_030253203.1 46.4% 49% (many diffs)
27 mouse 140546 Eri3 exoribonuclease 3 XM_030253204.1 46.4% 49% (many diffs)
28 mouse 140546 Eri3 exoribonuclease 3 XM_030253199.1 42.8% 45.1% (many diffs)
29 mouse 140546 Eri3 exoribonuclease 3 NM_001285899.1 40.6% 42.9% (many diffs)
30 mouse 140546 Eri3 exoribonuclease 3 XM_030253201.1 40.3% 42.6% (many diffs)
31 mouse 140546 Eri3 exoribonuclease 3 XM_017319961.2 38.6% 34.8% (many diffs)
32 mouse 140546 Eri3 exoribonuclease 3 XM_017319962.2 38.6% 34.8% (many diffs)
33 mouse 140546 Eri3 exoribonuclease 3 XM_017319964.2 38.6% 34.8% (many diffs)
34 mouse 140546 Eri3 exoribonuclease 3 XM_017319965.2 38.6% 34.8% (many diffs)
35 mouse 140546 Eri3 exoribonuclease 3 XM_017319966.2 38.6% 34.8% (many diffs)
36 mouse 140546 Eri3 exoribonuclease 3 XM_017319967.1 38.6% 34.8% (many diffs)
37 mouse 140546 Eri3 exoribonuclease 3 XM_030253197.1 38.3% 40.4% (many diffs)
38 mouse 140546 Eri3 exoribonuclease 3 NM_001356405.1 35.9% 37.9% (many diffs)
39 mouse 140546 Eri3 exoribonuclease 3 NM_080469.4 35.7% 37.6% (many diffs)
40 mouse 140546 Eri3 exoribonuclease 3 XM_030253194.1 33.5% 35.3% (many diffs)
41 mouse 140546 Eri3 exoribonuclease 3 XM_017319960.2 30.8% 27.8% (many diffs)
42 mouse 140546 Eri3 exoribonuclease 3 XM_011240437.3 30.6% 27.7% (many diffs)
43 mouse 140546 Eri3 exoribonuclease 3 XR_003954877.1 28.2% (many diffs)
44 mouse 140546 Eri3 exoribonuclease 3 XM_030253200.1 27.9% 26.2% (many diffs)
45 mouse 140546 Eri3 exoribonuclease 3 XM_030253207.1 27.9% 26.2% (many diffs)
46 mouse 140546 Eri3 exoribonuclease 3 XM_030253208.1 27.9% 26.2% (many diffs)
47 mouse 140546 Eri3 exoribonuclease 3 XM_030253195.1 21.4% 20.1% (many diffs)
48 mouse 140546 Eri3 exoribonuclease 3 XR_003954875.1 20.2% (many diffs)
49 mouse 140546 Eri3 exoribonuclease 3 XR_003954876.1 19.8% (many diffs)
50 mouse 140546 Eri3 exoribonuclease 3 XR_003954874.1 18.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
450
ORF length:
384
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ggatggtcag ccaagcctgc agcaagtgct ggagagggtc gatgaatgga
121tggcgaagga aggcctctta gatccaaacg tcaagtcaat ttttgtcacc tgtggagact
181gggacttaaa agtcatgctc cCAGGCCAGT GCCAGTACTT GGGCTTGCCA GTGGCGGATT
241ACTTCAAGCA GTGGATTAAT CTGAAAAAGG CTTACAGCTT CGCCATGGGC TGCTGGCCCA
301AGAATGGACT TCTAGACATG AACAAGGGCC TCAGCCTGCA ACACATAGGC CGGCCCCACA
361GCGGCATTGA CGACTGCAAG AACATTGCCA ACATCATGAA GACACTCGCC TATCGAGGCT
421TCATCTTCAA GCAGACATCG AAGCCGTTCT GCCCAACTTT CTTGTACAAA GTGGTTGATA
481TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
541CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATGCCT
601ATACCACAGT ATAAGGTTTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
661tgaaagatt

Download FASTA (ORF) (Full)