Transcript: Human XM_017004105.2

PREDICTED: Homo sapiens RANBP2 like and GRIP domain containing 1 (RGPD1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RGPD1 (400966)
Length:
7015
CDS:
156..5438

Additional Resources:

NCBI RefSeq record:
XM_017004105.2
NBCI Gene record:
RGPD1 (400966)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017004105.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256744 AGACCAGGGACTACCTAATAA pLKO_005 2290 CDS 100% 15.000 7.500 Y RGPD6 n/a
2 TRCN0000282236 AGCGGTTGGCAGCACAATTTA pLKO_005 3565 CDS 100% 15.000 7.500 Y RGPD2 n/a
3 TRCN0000256081 AGTCAGTCACCAGCATATAAT pLKO_005 2766 CDS 100% 15.000 7.500 Y RGPD6 n/a
4 TRCN0000364583 ATACCAGCCACTTACAATTAA pLKO_005 1633 CDS 100% 15.000 7.500 Y RGPD4 n/a
5 TRCN0000364658 ATGGGTCAGCATGGTAATAAT pLKO_005 1053 CDS 100% 15.000 7.500 Y RGPD4 n/a
6 TRCN0000435814 CCAGGAAGTCCTGCAATTTAT pLKO_005 528 CDS 100% 15.000 7.500 Y RGPD5 n/a
7 TRCN0000017740 CCCAGGAAGTCCTGCAATTTA pLKO.1 527 CDS 100% 15.000 7.500 Y RGPD4 n/a
8 TRCN0000256082 GACCAGGGACTACCTAATAAA pLKO_005 2291 CDS 100% 15.000 7.500 Y RGPD6 n/a
9 TRCN0000369313 ACGTCTTGCTGCAGTTCATTT pLKO_005 5269 CDS 100% 13.200 6.600 Y RGPD4 n/a
10 TRCN0000364584 ATGAGAAGGGACCAAGTATTA pLKO_005 4320 CDS 100% 13.200 6.600 Y RGPD4 n/a
11 TRCN0000163667 GCAGTCCTTATGGAGCAAATT pLKO.1 5172 CDS 100% 13.200 6.600 Y RGPD1 n/a
12 TRCN0000262419 GCGAAGAGACCAAGTACTAAA pLKO_005 3431 CDS 100% 13.200 6.600 Y RGPD2 n/a
13 TRCN0000262420 AGCGGCTTCTGTTAGACATAC pLKO_005 3634 CDS 100% 10.800 5.400 Y RGPD2 n/a
14 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 5463 3UTR 100% 10.800 5.400 Y MRPS16 n/a
15 TRCN0000262421 CTACACCATCTCCTACCAAAT pLKO_005 2485 CDS 100% 10.800 5.400 Y RGPD2 n/a
16 TRCN0000163545 GCCAAGAAGTAAAGGCCATTA pLKO.1 2596 CDS 100% 10.800 5.400 Y RGPD1 n/a
17 TRCN0000369388 TTACTGCTGGCCTATGCTAAT pLKO_005 855 CDS 100% 10.800 5.400 Y RGPD4 n/a
18 TRCN0000017742 GATTGCAGAATTGCTTTGTAA pLKO.1 449 CDS 100% 5.625 2.813 Y RGPD4 n/a
19 TRCN0000150710 CCAGCATATAATTCCCAGTAT pLKO.1 2775 CDS 100% 4.950 2.475 Y RGPD5 n/a
20 TRCN0000017738 CGTTCAAGTTTAGAGTGGAAT pLKO.1 744 CDS 100% 4.950 2.475 Y RGPD4 n/a
21 TRCN0000152360 CGTTCAAGTTTAGAGTGGAAT pLKO.1 744 CDS 100% 4.950 2.475 Y RGPD5 n/a
22 TRCN0000162173 CGTTCAAGTTTAGAGTGGAAT pLKO.1 744 CDS 100% 4.950 2.475 Y RGPD1 n/a
23 TRCN0000162985 GAGACAAGGTTTCACCATGTT pLKO.1 5394 CDS 100% 4.950 2.475 Y LINC00336 n/a
24 TRCN0000158488 CCACTTACAATTAAAGGAGAA pLKO.1 1640 CDS 100% 4.050 2.025 Y RGPD1 n/a
25 TRCN0000017741 CGTGTGTTGTACAGACCCTTA pLKO.1 766 CDS 100% 4.050 2.025 Y RGPD4 n/a
26 TRCN0000165640 GCTCACAGATTTCTGGGTCTT pLKO.1 336 CDS 100% 4.050 2.025 Y RGPD1 n/a
27 TRCN0000017739 CCGTTGAATGTTACAGGCGTT pLKO.1 388 CDS 100% 2.160 1.080 Y RGPD4 n/a
28 TRCN0000337140 CAAGAAGTAAAGGCCATTAAG pLKO_005 2598 CDS 100% 13.200 6.600 Y RGPD3 n/a
29 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 5463 3UTR 100% 10.800 5.400 Y CD3EAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017004105.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.