Transcript: Human XM_017005558.2

PREDICTED: Homo sapiens insulin like growth factor 2 mRNA binding protein 2 (IGF2BP2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IGF2BP2 (10644)
Length:
3553
CDS:
85..1773

Additional Resources:

NCBI RefSeq record:
XM_017005558.2
NBCI Gene record:
IGF2BP2 (10644)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005558.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255463 GGTGCCTGCAGCGGTAATATA pLKO_005 2223 3UTR 100% 15.000 21.000 N IGF2BP2 n/a
2 TRCN0000255468 GTTGGCCCAGGGCGTTAAATT pLKO_005 3019 3UTR 100% 15.000 21.000 N IGF2BP2 n/a
3 TRCN0000265644 GCCGTTGTCAACGTCACATAT pLKO_005 463 CDS 100% 13.200 18.480 N IGF2BP2 n/a
4 TRCN0000255460 ATCGAGACCCTCTCGGGTAAA pLKO_005 247 CDS 100% 10.800 15.120 N IGF2BP2 n/a
5 TRCN0000148565 CGGATCTTTGGGAAACTGAAA pLKO.1 1444 CDS 100% 4.950 3.960 N IGF2BP2 n/a
6 TRCN0000255461 AGCGCAAGATCAGGGAAATTG pLKO_005 1688 CDS 100% 13.200 9.240 N IGF2BP2 n/a
7 TRCN0000146301 CAGTGCTGAGATAGAGATTAT pLKO.1 1107 CDS 100% 13.200 9.240 N IGF2BP2 n/a
8 TRCN0000255466 TCAGGCCAGACAGATTGATTT pLKO_005 663 CDS 100% 13.200 9.240 N IGF2BP2 n/a
9 TRCN0000255467 TTCCCGCATCATCACTCTTAT pLKO_005 1225 CDS 100% 13.200 9.240 N IGF2BP2 n/a
10 TRCN0000255462 AGTGAAGCTGGAAGCGCATAT pLKO_005 1494 CDS 100% 10.800 7.560 N IGF2BP2 n/a
11 TRCN0000255465 ATCAAACAGCTGGCGAGATTC pLKO_005 1321 CDS 100% 10.800 7.560 N IGF2BP2 n/a
12 TRCN0000255464 CTGAAGCATGCCGCATGATTC pLKO_005 857 CDS 100% 10.800 7.560 N IGF2BP2 n/a
13 TRCN0000149002 GCATATACAACCCGGAAAGAA pLKO.1 1052 CDS 100% 5.625 3.938 N IGF2BP2 n/a
14 TRCN0000148718 CTTAACCAGTGCAGAAGTCAT pLKO.1 1584 CDS 100% 4.950 3.465 N IGF2BP2 n/a
15 TRCN0000096763 CCTCTCGGGTAAAGTGGAATT pLKO.1 255 CDS 100% 0.000 0.000 N Igf2bp2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005558.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10208 pDONR223 100% 91.7% 91.7% None 1_3delATG;339_356del;1089_1090ins129 n/a
2 ccsbBroad304_10208 pLX_304 0% 91.7% 91.7% V5 1_3delATG;339_356del;1089_1090ins129 n/a
3 TRCN0000469479 CACTGCACGGTTCACGCTGAGAAA pLX_317 22.8% 91.7% 91.7% V5 1_3delATG;339_356del;1089_1090ins129 n/a
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