Transcript: Human XM_017005706.1

PREDICTED: Homo sapiens lysozyme like 4 (LYZL4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LYZL4 (131375)
Length:
1019
CDS:
392..832

Additional Resources:

NCBI RefSeq record:
XM_017005706.1
NBCI Gene record:
LYZL4 (131375)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372955 GGTTCCAAGTGGTGCTTACAT pLKO_005 433 CDS 100% 5.625 7.875 N LYZL4 n/a
2 TRCN0000163083 GCTAAGAAACTCCACGATGGA pLKO.1 473 CDS 100% 2.640 3.696 N LYZL4 n/a
3 TRCN0000160051 CCGCTTTACTGAATCCTAATT pLKO.1 681 CDS 100% 13.200 9.240 N LYZL4 n/a
4 TRCN0000372897 GTACTGCCAGTACTCCGATAC pLKO_005 778 CDS 100% 6.000 4.200 N LYZL4 n/a
5 TRCN0000158669 CAGTTGCATCTTGTGAATGAA pLKO.1 861 3UTR 100% 5.625 3.938 N LYZL4 n/a
6 TRCN0000163069 CCAAGTGGTGCTTACATCTTG pLKO.1 437 CDS 100% 4.950 3.465 N LYZL4 n/a
7 TRCN0000378836 CATGGCCATCTACGAGAACAC pLKO_005 568 CDS 100% 4.050 2.835 N LYZL4 n/a
8 TRCN0000160574 CTGAATCCTAATTTAGAGAAG pLKO.1 689 CDS 100% 4.050 2.835 N LYZL4 n/a
9 TRCN0000158814 GAAGACAATTAAATGTGCCAA pLKO.1 706 CDS 100% 2.640 1.848 N LYZL4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04872 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04872 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478309 ACCGAATCCGACGTTTTCATGCTT pLX_317 64.6% 100% 100% V5 n/a
4 TRCN0000487824 TATACGAGGTAGACCTATGCCGAC pLX_317 64% 100% 100% V5 (not translated due to prior stop codon) n/a
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