Transcript: Human XM_017005942.2

PREDICTED: Homo sapiens PDZ domain containing ring finger 3 (PDZRN3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PDZRN3 (23024)
Length:
4221
CDS:
173..3286

Additional Resources:

NCBI RefSeq record:
XM_017005942.2
NBCI Gene record:
PDZRN3 (23024)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005942.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000295258 CAAATTCATGACAGGATTATT pLKO_005 980 CDS 100% 15.000 10.500 N Pdzrn3 n/a
2 TRCN0000147485 GAAGACGACATTGGGATTTAT pLKO.1 1409 CDS 100% 15.000 10.500 N PDZRN3 n/a
3 TRCN0000427656 TCAGCAACGAGTCTTTCATTT pLKO_005 1944 CDS 100% 13.200 9.240 N PDZRN3 n/a
4 TRCN0000432198 ATGATGACAGGAACGACTTTC pLKO_005 1623 CDS 100% 10.800 7.560 N PDZRN3 n/a
5 TRCN0000415478 CAGAAGAAATTCACCGAATAC pLKO_005 821 CDS 100% 10.800 7.560 N PDZRN3 n/a
6 TRCN0000417543 CATCCAGTGAAGGAATCTTTG pLKO_005 912 CDS 100% 10.800 7.560 N PDZRN3 n/a
7 TRCN0000415623 CATGAATACTACGATCCAAAT pLKO_005 1265 CDS 100% 10.800 7.560 N PDZRN3 n/a
8 TRCN0000423599 GCTCGGAGCAAGAGAACAATG pLKO_005 1833 CDS 100% 10.800 7.560 N PDZRN3 n/a
9 TRCN0000183018 CGTTACTGAATGTGTTTCATA pLKO.1 3719 3UTR 100% 5.625 3.938 N PDZRN3 n/a
10 TRCN0000183332 GAGTATACAATTCCTTCCTAT pLKO.1 3249 CDS 100% 4.950 3.465 N PDZRN3 n/a
11 TRCN0000147223 GCCCATTGAAAGAATTTGCAT pLKO.1 3967 3UTR 100% 3.000 2.100 N PDZRN3 n/a
12 TRCN0000180817 GCCTGCAAATTCATGACAGGA pLKO.1 975 CDS 100% 2.640 1.848 N PDZRN3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005942.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.