Transcript: Human XM_017007107.1

PREDICTED: Homo sapiens thrombopoietin (THPO), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
THPO (7066)
Length:
1699
CDS:
127..1395

Additional Resources:

NCBI RefSeq record:
XM_017007107.1
NBCI Gene record:
THPO (7066)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007107.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058809 CGGACATTTCCTCAGGAACAT pLKO.1 1233 CDS 100% 4.950 3.960 N THPO n/a
2 TRCN0000373685 GACCTCCGAGTCCTCAGTAAA pLKO_005 631 CDS 100% 13.200 9.240 N THPO n/a
3 TRCN0000058812 CCAGCCCTCTTCTAAACACAT pLKO.1 1422 3UTR 100% 4.950 3.465 N THPO n/a
4 TRCN0000058808 CCCTCTTCTAAACACATCCTA pLKO.1 1426 3UTR 100% 3.000 2.100 N THPO n/a
5 TRCN0000058811 CTTCTCCTAACTGCAAGGCTA pLKO.1 580 CDS 100% 2.640 1.848 N THPO n/a
6 TRCN0000373764 CAACCTCCAGCCTGGATATTC pLKO_005 1276 CDS 100% 13.200 7.920 N THPO n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007107.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01668 pDONR223 100% 57.6% 37.4% None 1_420del;883_884ins116;1266_1267ins85 n/a
2 ccsbBroad304_01668 pLX_304 0% 57.6% 37.4% V5 1_420del;883_884ins116;1266_1267ins85 n/a
3 TRCN0000480742 CATGCGGCTCTGCCTTACAATGCG pLX_317 35.3% 57.6% 37.4% V5 1_420del;883_884ins116;1266_1267ins85 n/a
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