Transcript: Human XM_017009457.1

PREDICTED: Homo sapiens potassium calcium-activated channel subfamily N member 2 (KCNN2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCNN2 (3781)
Length:
1908
CDS:
763..1590

Additional Resources:

NCBI RefSeq record:
XM_017009457.1
NBCI Gene record:
KCNN2 (3781)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009457.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418185 TATGGTTCTAATCAGCGTTAT pLKO_005 1667 3UTR 100% 10.800 15.120 N KCNN2 n/a
2 TRCN0000434720 AGCTAGAAGAGAATAAGTTAA pLKO_005 1585 CDS 100% 13.200 9.240 N KCNN2 n/a
3 TRCN0000043844 CCAGAACATCATGTATGATAT pLKO.1 1305 CDS 100% 13.200 9.240 N KCNN2 n/a
4 TRCN0000423006 GCGATGTGGTTGATATCAATA pLKO_005 892 CDS 100% 13.200 9.240 N KCNN2 n/a
5 TRCN0000043847 CTGCCAATGTACTCAGGGAAA pLKO.1 1118 CDS 100% 4.050 2.835 N KCNN2 n/a
6 TRCN0000069177 GAGACTTTGATTGGTAGCATT pLKO.1 1393 CDS 100% 4.950 3.465 N Kcnn2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009457.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00901 pDONR223 100% 84% 84% None 1_132del n/a
2 ccsbBroad304_00901 pLX_304 0% 84% 84% V5 1_132del n/a
3 TRCN0000480327 AAGGTTGAGGTGAGAACAGGAACC pLX_317 51.7% 84% 84% V5 1_132del n/a
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