Construct: ORF TRCN0000471804

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001097.1_s317c1
Derived from:
ccsbBroadEn_11595
DNA Barcode:
AGGGCCGCGCCCCGAAAGTTCATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KATNA1 (11104)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471804
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11104 KATNA1 katanin catalytic subunit A1 NM_001204076.1 100% 100%
2 human 11104 KATNA1 katanin catalytic subunit A1 XM_005266805.4 63.2% 60.4% (many diffs)
3 human 11104 KATNA1 katanin catalytic subunit A1 NM_007044.4 62.9% 62.5% (many diffs)
4 human 11104 KATNA1 katanin catalytic subunit A1 XM_005266804.2 62.9% 62.5% (many diffs)
5 human 11104 KATNA1 katanin catalytic subunit A1 XM_017010207.2 62.9% 62.5% (many diffs)
6 human 11104 KATNA1 katanin catalytic subunit A1 XM_017010210.2 62.9% 62.5% (many diffs)
7 human 11104 KATNA1 katanin catalytic subunit A1 XM_017010208.1 49.2% 34.5% (many diffs)
8 human 11104 KATNA1 katanin catalytic subunit A1 XM_017010209.1 49.2% 34.5% (many diffs)
9 human 11104 KATNA1 katanin catalytic subunit A1 XM_024446317.1 49.2% 34.5% (many diffs)
10 mouse 23924 Katna1 katanin p60 (ATPase-contain... NM_011835.2 55.7% 57.2% (many diffs)
11 mouse 624710 Gm6524 predicted gene 6524; katani... NR_028307.1 50.6% (many diffs)
12 mouse 23924 Katna1 katanin p60 (ATPase-contain... XM_006512738.2 32.4% 34.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
999
ORF length:
933
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tcttcttatg attagtgaga atgtaaaatt ggctcgtgaa tatgcattgc
121tgggaaacta tgactctgcg atggtctatt atcagggagt tcttgaccaa atgaacaagt
181atctgtactc agtcaaagat acatacctcc agcagaaatg gcaacaggtt tggcaggaaa
241taaatgtgga agctaaacat gttaaagata tcatgaaaac actagagagc tttaaactgg
301acagcactcc cttgaaagcg gcacagcatg accttccagc ttctgaggga gaagtctggt
361ccatgcctgt acctgttgaa cgaagaccct caccaggacc tagaaaacgc caatcttctc
421agtacagtga ccctaaatca catggtaatc gtccaagtac aactgtcaga gttcaccgtt
481catctgcaca gaatgttcac aatgacagag ggaaagctgt tcgttgtcgt gaaaagaaag
541aaCAGAATAA AGGAAGAGAG GAAAAGGGAG TACTGATGGT CGGCCCACCT GGCACGGGGA
601AGACGCTCCT TGCTAAAGCA GTAGCTACAG AATGCAAGAC AACATTCTTC AATGTCTCTT
661CATCAACTTT GACTTCCAAA TACAGAGGAG AATCTGAGAA GCTTGTTCGT CTTCTGTTTG
721AAATGGCTCG ATTTTATTCT CCAGCCACCA TATTTATTGA TGAGATAGAC TCCATCTGTA
781GTCGCCGAGG GACTTCTGAA GAACATGAAG CAAGCAGAAG GGTGAAAGCG GAGCTGCTGG
841TTCAGATGGA TGGTGTTGGA GGTACTTCTG AAAATGATGA CCCTTCCAAA ATGGTTATGG
901TTCTGGCAGC TACTAATTTT CCCTGGGATA TAGATGAGGC TTTAAGACGA CGCCTTGAGA
961AACGAATCTA TATTCCTTTG CCGTCAGGGA TGCGTCCTTG CCCAACTTTC TTGTACAAAG
1021TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1081GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1141ACGAAGGGCC GCGCCCCGAA AGTTCATTAC GCGTTAAGTC gacaatcaac ctctggatta
1201caaaatttgt gaaagatt

Download FASTA (ORF) (Full)