Transcript: Human XM_017012726.2

PREDICTED: Homo sapiens tyrosylprotein sulfotransferase 1 (TPST1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TPST1 (8460)
Length:
2974
CDS:
292..1404

Additional Resources:

NCBI RefSeq record:
XM_017012726.2
NBCI Gene record:
TPST1 (8460)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017012726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035761 GCATCAGTACATTCAATGATT pLKO.1 853 CDS 100% 5.625 7.875 N TPST1 n/a
2 TRCN0000330249 ACGTAGCCAGCCAGTCAAATT pLKO_005 402 CDS 100% 13.200 9.240 N TPST1 n/a
3 TRCN0000330250 ACTTACCTTTCTAGGTTATTC pLKO_005 793 CDS 100% 13.200 9.240 N TPST1 n/a
4 TRCN0000330187 ATGTGGTCACGGTCAAGTAAA pLKO_005 628 CDS 100% 13.200 9.240 N TPST1 n/a
5 TRCN0000330188 CAGTGTATGGAGGTTGGTTAT pLKO_005 964 CDS 100% 10.800 7.560 N TPST1 n/a
6 TRCN0000330186 CAGGAGCCTCTTCCATACATG pLKO_005 1411 3UTR 100% 4.950 3.465 N TPST1 n/a
7 TRCN0000035759 CCAAGTAATCAAGCCAGTCAA pLKO.1 1155 CDS 100% 4.950 3.465 N TPST1 n/a
8 TRCN0000035763 CGGTGGATGAGAACACTCTTA pLKO.1 1033 CDS 100% 4.950 3.465 N TPST1 n/a
9 TRCN0000035762 CGAAGGGTCTATAAGGGAGAA pLKO.1 1330 CDS 100% 4.050 2.835 N TPST1 n/a
10 TRCN0000035760 CCTATCACAAAGATATGCCTT pLKO.1 482 CDS 100% 2.640 1.848 N TPST1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017012726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01932 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01932 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472880 GCCGCAAAGCACGGCGATCTAAAC pLX_317 49.9% 100% 100% V5 n/a
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