Transcript: Human XM_017013905.1

PREDICTED: Homo sapiens phospholipid phosphatase 5 (PLPP5), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PLPP5 (84513)
Length:
1437
CDS:
88..696

Additional Resources:

NCBI RefSeq record:
XM_017013905.1
NBCI Gene record:
PLPP5 (84513)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013905.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000295998 CTACGTGGAGGCGGAGTATTT pLKO_005 378 CDS 100% 13.200 18.480 N PLPP5 n/a
2 TRCN0000040241 AGCCGATGTTTGTTATTGCAT pLKO.1 407 CDS 100% 3.000 4.200 N PLPP5 n/a
3 TRCN0000040238 CGTCTTTACCAACACAATAAA pLKO.1 649 CDS 100% 15.000 12.000 N PLPP5 n/a
4 TRCN0000298906 CGTCTTTACCAACACAATAAA pLKO_005 649 CDS 100% 15.000 12.000 N PLPP5 n/a
5 TRCN0000296043 TGATCTTCCTGGCCAAATTTC pLKO_005 446 CDS 100% 13.200 9.240 N PLPP5 n/a
6 TRCN0000040242 GACACAAGAGACAGCAGACAA pLKO.1 478 CDS 100% 4.950 3.465 N PLPP5 n/a
7 TRCN0000298907 GACACAAGAGACAGCAGACAA pLKO_005 478 CDS 100% 4.950 3.465 N PLPP5 n/a
8 TRCN0000040240 CCCAGTGGACATTCTTCCTTT pLKO.1 1132 3UTR 100% 4.950 2.970 N PLPP5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013905.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_16036 pDONR223 0% 24.3% 25.3% None (many diffs) n/a
2 ccsbBroad304_16036 pLX_304 0% 24.3% 25.3% V5 (many diffs) n/a
3 ccsbBroadEn_12825 pDONR223 100% 21% 22.3% None (many diffs) n/a
4 ccsbBroad304_12825 pLX_304 0% 21% 22.3% V5 (many diffs) n/a
5 TRCN0000467220 ATTTTGTGCCGACTTTTCAACGTC pLX_317 59.3% 21% 22.3% V5 (many diffs) n/a
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