Construct: ORF ccsbBroadEn_12825
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008986.1_s300c1, BRDN0000396230
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLPP5 (84513)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544671.2 | 100% | 100% | |
| 2 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544672.2 | 90.9% | 90.6% | 0_1ins54;6_12delAGCTCCAinsT |
| 3 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001102559.2 | 84.4% | 84.4% | 1_123del |
| 4 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354452.2 | 77.6% | 77.6% | 1_123del;183_184ins54 |
| 5 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354456.2 | 66.7% | 65.1% | (many diffs) |
| 6 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_032483.3 | 65.7% | 64.3% | (many diffs) |
| 7 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447307.1 | 65.2% | 65.2% | 1_270del;328_414del |
| 8 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354454.1 | 59.2% | 58% | (many diffs) |
| 9 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354458.2 | 59.1% | 59.1% | 0_1ins273 |
| 10 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354459.2 | 59.1% | 59.1% | 0_1ins273 |
| 11 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447305.1 | 59.1% | 59.1% | 0_1ins273 |
| 12 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447306.1 | 59.1% | 59.1% | 0_1ins273 |
| 13 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001102560.2 | 47.5% | 42.8% | (many diffs) |
| 14 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_949492.2 | 47.2% | (many diffs) | |
| 15 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_949491.2 | 43.8% | (many diffs) | |
| 16 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745611.2 | 39.7% | (many diffs) | |
| 17 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NR_148893.2 | 29.5% | 1_148del;364_490del;945_2261del | |
| 18 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544674.2 | 29.3% | 24% | (many diffs) |
| 19 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_017013906.2 | 29.3% | 24% | (many diffs) |
| 20 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354457.2 | 27.4% | 25.7% | 1_123del;274_385del;483_484ins421 |
| 21 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544675.3 | 24.4% | 23.8% | (many diffs) |
| 22 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544670.2 | 22.4% | 24.6% | (many diffs) |
| 23 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_017013905.1 | 21% | 22.3% | (many diffs) |
| 24 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745609.2 | 17.6% | 1_349del;500_611del;1131_3787del | |
| 25 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745608.2 | 17.2% | (many diffs) | |
| 26 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NM_028000.1 | 73.5% | 76.1% | (many diffs) |
| 27 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NM_001293703.1 | 64% | 59.4% | (many diffs) |
| 28 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | XM_006509194.3 | 60.6% | 61.1% | (many diffs) |
| 29 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NR_121642.1 | 36.6% | (many diffs) | |
| 30 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NR_121643.1 | 33.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 735
- ORF length:
- 669
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GCTCTACCGG AACCCCTACG TGGAGGCGGA GTATTTCCCC ACCAAGCCGA 121 TGTTTGTTAT TGCATTTCTC TCTCCACTGT CTCTGATCTT CCTGGCCAAA TTTCTCAAGA 181 AGGCAGACAC AAGAGACAGC AGACAAGCCT GCCTGGCTGC CAGCCTTGCC CTGGCTCTGA 241 ATGGCGTCTT TACCAACACA ATAAAACTGA TCGTAGGGAG GCCACGCCCA GATTTCTTCT 301 ACCGCTGCTT CCCTGATGGG CTAGCCCATT CTGACTTGAT GTGTACAGGG GATAAGGACG 361 TGGTGAATGA GGGCCGAAAG AGCTTCCCCA GTGGACATTC TTCCTTTGCA TTTGCTGGTC 421 TGGCCTTTGC GTCCTTCTAC CTGGCAGGGA AGTTACACTG CTTCACACCA CAAGGCCGTG 481 GGAAATCTTG GAGGTTCTGT GCCTTTCTGT CACCTCTACT TTTTGCAGCT GTGATTGCAC 541 TGTCCCGCAC ATGTGACTAC AAGCATCACT GGCAAGATGT ACTAGTTGGA TCCATGATTG 601 GAATGACATT TGCCTATGTC TGCTATCGGC AGTATTATCC TCCTCTGACT GATGCAGAAT 661 GCCATAAACC ATTTCAAGAC AAACTTGTAC TTTCCACTGC ACAGAAGCCT GGGGATTCTT 721 ATTGTTTTGA TATTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 781 tatcaatttg ttgcaacgaa c