Construct: ORF ccsbBroadEn_16036
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008008.1_s300c1, BRDN0000395279
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLPP5 (84513)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_032483.3 | 81% | 81% | 1_123del |
| 2 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354456.2 | 78.1% | 77.3% | (many diffs) |
| 3 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544671.2 | 77.8% | 76.2% | (many diffs) |
| 4 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354454.1 | 71.4% | 71.4% | 1_123del;181_267del |
| 5 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544672.2 | 69% | 67.1% | (many diffs) |
| 6 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001102559.2 | 65.7% | 64.3% | (many diffs) |
| 7 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354452.2 | 58.9% | 57.5% | (many diffs) |
| 8 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001102560.2 | 57.9% | 52% | (many diffs) |
| 9 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447307.1 | 50.7% | 49.7% | (many diffs) |
| 10 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NR_148894.2 | 45.8% | (many diffs) | |
| 11 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_949492.2 | 44.1% | 1_349del;500_611del;987_1189del | |
| 12 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_949491.2 | 40.8% | (many diffs) | |
| 13 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354458.2 | 37% | 35.4% | (many diffs) |
| 14 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354459.2 | 37% | 35.4% | (many diffs) |
| 15 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447305.1 | 37% | 35.4% | (many diffs) |
| 16 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_024447306.1 | 37% | 35.4% | (many diffs) |
| 17 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745611.2 | 36.8% | 1_356del;570_910del;1223_1425del | |
| 18 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544674.2 | 34.6% | 28.3% | (many diffs) |
| 19 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_017013906.2 | 34.6% | 28.3% | (many diffs) |
| 20 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NM_001354457.2 | 32.6% | 31.1% | 1_123del;274_385del;483_484ins277 |
| 21 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544675.3 | 28.7% | 28.1% | (many diffs) |
| 22 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_011544670.2 | 25.7% | 22.1% | (many diffs) |
| 23 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XM_017013905.1 | 24.3% | 25.3% | (many diffs) |
| 24 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | NR_148893.2 | 23% | (many diffs) | |
| 25 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745609.2 | 13.7% | (many diffs) | |
| 26 | human | 84513 | PLPP5 | phospholipid phosphatase 5 | XR_001745608.2 | 13.4% | (many diffs) | |
| 27 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | XM_006509194.3 | 70.3% | 73.3% | (many diffs) |
| 28 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NM_001293703.1 | 68.1% | 69.8% | (many diffs) |
| 29 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NM_028000.1 | 59.5% | 60.7% | (many diffs) |
| 30 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NR_121642.1 | 28.9% | (many diffs) | |
| 31 | mouse | 71910 | Plpp5 | phospholipid phosphatase 5 | NR_121643.1 | 26.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 594
- ORF length:
- 525
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gtggctctac cggaacccct acgtggaggc ggagtatttc cccaccaagc 121 cgatgtttgt tattgcattt ctctctccac tgtctctgat cttcctggcc aaatttctca 181 agaaggcaga cacaagagac agcagacaag cctgcctggc tgccagcctt gccctggctc 241 tgaatggcgt ctttaccaac acaataaaac tgatcgtagg gaggccacgc ccagatttct 301 tctaccgctg cttccctgat gggctagccc attctgactt gatgtgtaca ggggataagg 361 acgtggtgaa tgagggccga aagagcttcc ccagtggaca ttcttccttt gcatttgctg 421 gtctggcctt tgcgtccttc tacctggcag ggaagttaca ctgcttcaca ccacaaggcc 481 gtgggaaatc ttggaggttc tgtgcctttc tgtcacctct actttttgca gctgtgattg 541 cactgtcccg cacatgtgac tacaagcatc actggcaagg accctttaaa tggttgccaa 601 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac