Transcript: Human XM_017018630.1

PREDICTED: Homo sapiens tripartite motif containing 66 (TRIM66), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRIM66 (9866)
Length:
10043
CDS:
219..4139

Additional Resources:

NCBI RefSeq record:
XM_017018630.1
NBCI Gene record:
TRIM66 (9866)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017018630.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239382 CTGTCATTGCATGGCTAATTT pLKO_005 5647 3UTR 100% 15.000 10.500 N TRIM66 n/a
2 TRCN0000239384 CCGGAGACTTCACCTTGTATT pLKO_005 568 CDS 100% 13.200 9.240 N TRIM66 n/a
3 TRCN0000239383 CGGCATTATTACCAGATTATC pLKO_005 3711 CDS 100% 13.200 9.240 N TRIM66 n/a
4 TRCN0000239385 TGTGAGAATGCCTGCTATAAC pLKO_005 3564 CDS 100% 13.200 9.240 N TRIM66 n/a
5 TRCN0000239386 TCAATAGTGAGCATAAGATTC pLKO_005 3046 CDS 100% 10.800 7.560 N TRIM66 n/a
6 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 7876 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
7 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 7040 3UTR 100% 10.800 5.400 Y SMIM11A n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 6874 3UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6875 3UTR 100% 13.200 6.600 Y LIAS n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 7985 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 7985 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017018630.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.