Transcript: Human XM_017019369.1

PREDICTED: Homo sapiens carbohydrate sulfotransferase 11 (CHST11), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CHST11 (50515)
Length:
5339
CDS:
1..1128

Additional Resources:

NCBI RefSeq record:
XM_017019369.1
NBCI Gene record:
CHST11 (50515)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017019369.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035914 CGAAGTCTACAAACTCGATTT pLKO.1 1062 CDS 100% 10.800 15.120 N CHST11 n/a
2 TRCN0000432550 GAAATCAACCACCGCTTGAAA pLKO_005 580 CDS 100% 5.625 7.875 N CHST11 n/a
3 TRCN0000035915 CGATGTCAAATTCGAGGAGTT pLKO.1 768 CDS 100% 4.050 5.670 N CHST11 n/a
4 TRCN0000424427 CTGGAAGAGGATTCTAATTAC pLKO_005 913 CDS 100% 13.200 9.240 N CHST11 n/a
5 TRCN0000035917 CCTATGCAAAGTCTACGAGAA pLKO.1 977 CDS 100% 4.050 2.835 N CHST11 n/a
6 TRCN0000035916 GCAGGAACTCTACAACCCAAT pLKO.1 185 CDS 100% 4.050 2.835 N CHST11 n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4807 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017019369.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000470969 AGCATCCGTTTTTAGTTGCCCGCT pLX_317 34.5% 86.3% 76.2% V5 (many diffs) n/a
2 ccsbBroadEn_08177 pDONR223 100% 86.2% 75.7% None (many diffs) n/a
3 ccsbBroad304_08177 pLX_304 0% 86.2% 75.7% V5 (many diffs) n/a
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