Transcript: Human XM_017020015.1

PREDICTED: Homo sapiens solute carrier family 41 member 2 (SLC41A2), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC41A2 (84102)
Length:
2458
CDS:
529..1719

Additional Resources:

NCBI RefSeq record:
XM_017020015.1
NBCI Gene record:
SLC41A2 (84102)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017020015.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422258 AGATTGGACTTTACGTTTAAA pLKO_005 600 CDS 100% 15.000 10.500 N SLC41A2 n/a
2 TRCN0000420283 CATTTGGCAAGATGGATTATC pLKO_005 717 CDS 100% 13.200 9.240 N SLC41A2 n/a
3 TRCN0000043949 CCTGCACTTCTTGGTCTCAAA pLKO.1 1129 CDS 100% 4.950 3.465 N SLC41A2 n/a
4 TRCN0000043951 GCCATGTTACAAGATGAAGAT pLKO.1 910 CDS 100% 4.950 3.465 N SLC41A2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017020015.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14304 pDONR223 100% 54.4% 54.1% None (many diffs) n/a
2 ccsbBroad304_14304 pLX_304 0% 54.4% 54.1% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000473433 ATGACGGTTCTCGCTTTCACACCC pLX_317 27.9% 54.4% 54.1% V5 (not translated due to frame shift) (many diffs) n/a
Download CSV