Transcript: Human XM_017022483.1

PREDICTED: Homo sapiens zinc finger protein 106 (ZNF106), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF106 (64397)
Length:
7241
CDS:
177..5696

Additional Resources:

NCBI RefSeq record:
XM_017022483.1
NBCI Gene record:
ZNF106 (64397)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022483.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304130 GAAATTGGCACTCGCTATAAA pLKO_005 4482 CDS 100% 15.000 21.000 N ZNF106 n/a
2 TRCN0000304190 ATACCATCCGCTGCTATAATG pLKO_005 4831 CDS 100% 13.200 18.480 N ZNF106 n/a
3 TRCN0000304191 TTTGGCGTTGTAGATCATTTA pLKO_005 5514 CDS 100% 13.200 18.480 N ZNF106 n/a
4 TRCN0000107377 CCCTGGCTTATTGCTAGACTT pLKO.1 2033 CDS 100% 4.950 6.930 N ZNF106 n/a
5 TRCN0000107378 GCAGCAGATAACTATGGAGAT pLKO.1 3329 CDS 100% 4.050 3.240 N ZNF106 n/a
6 TRCN0000304129 ACAGGTTGATGACTCTATTAA pLKO_005 2075 CDS 100% 15.000 10.500 N ZNF106 n/a
7 TRCN0000107375 CCAGACTTTGAGGATCAGTTT pLKO.1 6127 3UTR 100% 4.950 3.465 N ZNF106 n/a
8 TRCN0000300810 CCAGACTTTGAGGATCAGTTT pLKO_005 6127 3UTR 100% 4.950 3.465 N ZNF106 n/a
9 TRCN0000107376 CGGAAATGTATTGGTGTCTTT pLKO.1 4725 CDS 100% 4.950 3.465 N ZNF106 n/a
10 TRCN0000107379 GCAGGACATATTGAACGACAT pLKO.1 5646 CDS 100% 4.050 2.835 N ZNF106 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 6988 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6989 3UTR 100% 13.200 6.600 Y LIAS n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 7149 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022483.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.