Transcript: Human XM_017022560.2

PREDICTED: Homo sapiens solute carrier family 30 member 4 (SLC30A4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC30A4 (7782)
Length:
4093
CDS:
119..1408

Additional Resources:

NCBI RefSeq record:
XM_017022560.2
NBCI Gene record:
SLC30A4 (7782)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022560.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038374 CGGTTCAACAAACTTCGAGTT pLKO.1 242 CDS 100% 4.050 5.670 N SLC30A4 n/a
2 TRCN0000038375 GCAAAGAACTATCCATATGAA pLKO.1 727 CDS 100% 0.000 0.000 N SLC30A4 n/a
3 TRCN0000038376 CATACGATTCAAGCCAGAATA pLKO.1 1000 CDS 100% 13.200 10.560 N SLC30A4 n/a
4 TRCN0000414344 GGCATGTATAGATGTACTATT pLKO_005 1322 CDS 100% 13.200 10.560 N SLC30A4 n/a
5 TRCN0000420638 CATAGTTCACATACAGCTAAT pLKO_005 1234 CDS 100% 10.800 8.640 N SLC30A4 n/a
6 TRCN0000436078 TATGGGATACAGTAGTTATAA pLKO_005 1089 CDS 100% 15.000 10.500 N SLC30A4 n/a
7 TRCN0000038377 CCTCAAATCTATGCTAAGGAA pLKO.1 145 CDS 100% 3.000 2.100 N SLC30A4 n/a
8 TRCN0000038378 GTCCAAAGCAAACCATTTATT pLKO.1 1288 CDS 100% 15.000 9.000 N SLC30A4 n/a
9 TRCN0000079603 CCAGAATACAAGATTGCTGAT pLKO.1 1013 CDS 100% 4.050 2.835 N Slc30a4 n/a
10 TRCN0000308533 CCAGAATACAAGATTGCTGAT pLKO_005 1013 CDS 100% 4.050 2.835 N Slc30a4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022560.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01826 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01826 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466033 TTATGATGGGTGCAAACGTCTTGT pLX_317 33.5% 100% 100% V5 n/a
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