Transcript: Mouse XM_017314442.1

PREDICTED: Mus musculus RUN and FYVE domain containing 1 (Rufy1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rufy1 (216724)
Length:
3318
CDS:
501..1649

Additional Resources:

NCBI RefSeq record:
XM_017314442.1
NBCI Gene record:
Rufy1 (216724)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314442.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241682 CTATGAGCCCGAGGCCTTAAT pLKO_005 1223 CDS 100% 13.200 9.240 N Rufy1 n/a
2 TRCN0000192740 GCAGAGAGCATGAAAGAATTA pLKO.1 1396 CDS 100% 13.200 9.240 N Rufy1 n/a
3 TRCN0000201331 GAAAGAATTACCGATGTCCTT pLKO.1 1407 CDS 100% 2.640 1.848 N Rufy1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314442.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09020 pDONR223 100% 32.6% 32.8% None (many diffs) n/a
2 ccsbBroad304_09020 pLX_304 0% 32.6% 32.8% V5 (many diffs) n/a
3 TRCN0000469015 GGAGGAGGTCTCCTAAGCCCCTAG pLX_317 18.1% 32.6% 32.8% V5 (many diffs) n/a
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