Transcript: Mouse XM_017315588.1

PREDICTED: Mus musculus GA repeat binding protein, beta 1 (Gabpb1), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gabpb1 (14391)
Length:
2471
CDS:
249..1205

Additional Resources:

NCBI RefSeq record:
XM_017315588.1
NBCI Gene record:
Gabpb1 (14391)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017315588.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233974 GCAAGTCATCACGATAGTTAC pLKO_005 827 CDS 100% 10.800 15.120 N Gabpb1 n/a
2 TRCN0000085342 CCGGGTGGAATGTGCAGAAAT pLKO.1 1028 CDS 100% 13.200 10.560 N Gabpb1 n/a
3 TRCN0000085338 CGGGTGGAATGTGCAGAAATT pLKO.1 1029 CDS 100% 13.200 10.560 N Gabpb1 n/a
4 TRCN0000233975 CCCGATGGACAGCAAGTATTG pLKO_005 921 CDS 100% 10.800 7.560 N Gabpb1 n/a
5 TRCN0000218841 GATTGCTATGCAGAACCAAAT pLKO_005 524 CDS 100% 10.800 7.560 N Gabpb1 n/a
6 TRCN0000233973 TGCAATTCAGCAAGTAGTTAG pLKO_005 794 CDS 100% 10.800 7.560 N Gabpb1 n/a
7 TRCN0000085340 CATGCCAACATAGTAGAAGTT pLKO.1 495 CDS 100% 4.950 3.465 N Gabpb1 n/a
8 TRCN0000085341 GCAACAGACATTGCTGAAGAA pLKO.1 951 CDS 100% 4.950 3.465 N Gabpb1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017315588.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15421 pDONR223 0% 75.1% 80.9% None (many diffs) n/a
2 ccsbBroad304_15421 pLX_304 0% 75.1% 80.9% V5 (many diffs) n/a
3 TRCN0000474730 CCGTCAGAAGAAGATAGTACCATA pLX_317 43.5% 75.1% 80.9% V5 (many diffs) n/a
4 ccsbBroadEn_00606 pDONR223 100% 72.9% 78.7% None (many diffs) n/a
5 ccsbBroad304_00606 pLX_304 0% 72.9% 78.7% V5 (many diffs) n/a
6 TRCN0000472520 CGGAACTTGGCTGGCCAAACCGAT pLX_317 37.9% 72.9% 78.7% V5 (many diffs) n/a
7 ccsbBroadEn_15422 pDONR223 0% 63.8% 67% None (many diffs) n/a
8 ccsbBroad304_15422 pLX_304 0% 63.8% 67% V5 (many diffs) n/a
9 TRCN0000470558 GCAGAACGATTTCGCCTGCAAACG pLX_317 33.8% 63.8% 67% V5 (many diffs) n/a
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