Transcript: Mouse XM_017316997.1

PREDICTED: Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 1 (Rbfox1), transcript variant X34, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rbfox1 (268859)
Length:
4391
CDS:
409..1602

Additional Resources:

NCBI RefSeq record:
XM_017316997.1
NBCI Gene record:
Rbfox1 (268859)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316997.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336321 AGCACGCGTGATGACAAATAA pLKO_005 1053 CDS 100% 15.000 21.000 N Rbfox1 n/a
2 TRCN0000336324 CCATATCCAGAGTGCTATATT pLKO_005 2063 3UTR 100% 15.000 21.000 N Rbfox1 n/a
3 TRCN0000097930 GCACCAACTATCATAAATCTA pLKO.1 2304 3UTR 100% 5.625 7.875 N Rbfox1 n/a
4 TRCN0000097933 GTGCAGACATTTATGGTGGTT pLKO.1 1394 CDS 100% 2.640 3.696 N Rbfox1 n/a
5 TRCN0000336322 TTCATTGCAGGCTAGTATATA pLKO_005 1670 3UTR 100% 15.000 10.500 N Rbfox1 n/a
6 TRCN0000097931 CCGACAAATGTTTGGTCAATT pLKO.1 876 CDS 100% 13.200 9.240 N Rbfox1 n/a
7 TRCN0000353387 GGATCCAGACCTCCGACAAAT pLKO_005 864 CDS 100% 13.200 9.240 N Rbfox1 n/a
8 TRCN0000097932 CCCAGACACAACCTTCTGAAA pLKO.1 782 CDS 100% 4.950 3.465 N Rbfox1 n/a
9 TRCN0000097934 GCATGTGTCCAACATCCCTTT pLKO.1 834 CDS 100% 4.050 2.835 N Rbfox1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316997.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03449 pDONR223 100% 85.7% 89.5% None (many diffs) n/a
2 ccsbBroad304_03449 pLX_304 0% 85.7% 89.5% V5 (many diffs) n/a
3 TRCN0000466913 CTCAGGTTCATGAAGTTACTCGTT pLX_317 21.6% 85.7% 89.5% V5 (many diffs) n/a
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