Transcript: Mouse XM_017317362.1

PREDICTED: Mus musculus ribonucleic acid binding protein S1 (Rnps1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rnps1 (19826)
Length:
2299
CDS:
669..1586

Additional Resources:

NCBI RefSeq record:
XM_017317362.1
NBCI Gene record:
Rnps1 (19826)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017317362.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000109167 CGTACCTCTGTAACTTATGTT pLKO.1 1602 3UTR 100% 5.625 7.875 N Rnps1 n/a
2 TRCN0000315607 CGTACCTCTGTAACTTATGTT pLKO_005 1602 3UTR 100% 5.625 7.875 N Rnps1 n/a
3 TRCN0000109169 GCAGTTGAGATATCTCCTCTA pLKO.1 1694 3UTR 100% 4.050 5.670 N Rnps1 n/a
4 TRCN0000309161 GCAGTTGAGATATCTCCTCTA pLKO_005 1694 3UTR 100% 4.050 5.670 N Rnps1 n/a
5 TRCN0000109166 GCTAGGAGTCAAAGAGAATAA pLKO.1 701 CDS 100% 13.200 10.560 N Rnps1 n/a
6 TRCN0000305220 AGCTCCAACTCCTCCCGATAA pLKO_005 1566 CDS 100% 10.800 8.640 N Rnps1 n/a
7 TRCN0000320788 ACATGGATGGAGGACAAATTG pLKO_005 1333 CDS 100% 13.200 9.240 N RNPS1 n/a
8 TRCN0000305273 GAATGTGACCAAGGATCATAT pLKO_005 1178 CDS 100% 13.200 9.240 N Rnps1 n/a
9 TRCN0000305274 AGTCCAAGGATCGATCTAAAG pLKO_005 781 CDS 100% 10.800 7.560 N Rnps1 n/a
10 TRCN0000109165 CGCTTCAACTTAGAGGGCTAA pLKO.1 1969 3UTR 100% 4.050 2.835 N Rnps1 n/a
11 TRCN0000000052 CAGCTCCAACTCCTCCCGATA pLKO.1 1565 CDS 100% 1.350 0.945 N RNPS1 n/a
12 TRCN0000320710 CAGCTCCAACTCCTCCCGATA pLKO_005 1565 CDS 100% 1.350 0.945 N RNPS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017317362.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02560 pDONR223 100% 89.2% 100% None (many diffs) n/a
2 ccsbBroad304_02560 pLX_304 0% 89.2% 100% V5 (many diffs) n/a
3 TRCN0000471413 AGGGCACTCGTATTGGCCCGCTCC pLX_317 41% 89.2% 100% V5 (many diffs) n/a
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