Transcript: Mouse XM_017320146.1

PREDICTED: Mus musculus CDC42 binding protein kinase alpha (Cdc42bpa), transcript variant X26, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cdc42bpa (226751)
Length:
8543
CDS:
1611..6398

Additional Resources:

NCBI RefSeq record:
XM_017320146.1
NBCI Gene record:
Cdc42bpa (226751)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017320146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360802 AGCCCGACAGATACGTCAAAT pLKO_005 2388 CDS 100% 13.200 18.480 N Cdc42bpa n/a
2 TRCN0000022979 CCAGGATGACAATAACTTATA pLKO.1 1730 CDS 100% 13.200 18.480 N LOC381309 n/a
3 TRCN0000022679 GCCCGACAGATACGTCAAATT pLKO.1 2389 CDS 100% 13.200 18.480 N Cdc42bpa n/a
4 TRCN0000022971 GTCTTTACGATGAATGCAATA pLKO.1 1250 5UTR 100% 10.800 15.120 N LOC329302 n/a
5 TRCN0000022980 GATAAAGTATTCGCCATGAAA pLKO.1 1596 5UTR 100% 5.625 7.875 N LOC381309 n/a
6 TRCN0000022680 GCCGCTGCAATCATAGATCAT pLKO.1 4893 CDS 100% 4.950 6.930 N Cdc42bpa n/a
7 TRCN0000360798 CCGAGAGCAGAGCGAACATTA pLKO_005 3242 CDS 100% 13.200 10.560 N Cdc42bpa n/a
8 TRCN0000360799 AGTAAACCCTCACGAATTAAA pLKO_005 6656 3UTR 100% 15.000 10.500 N Cdc42bpa n/a
9 TRCN0000195596 CCAGGCTAGTGAGCGATTAAA pLKO.1 2954 CDS 100% 15.000 10.500 N CDC42BPA n/a
10 TRCN0000022981 GAGAGGGATGTGTTGGTAAAT pLKO.1 1671 CDS 100% 13.200 9.240 N LOC381309 n/a
11 TRCN0000022972 GTAGACATCGTAAGGGCATTT pLKO.1 1090 5UTR 100% 10.800 7.560 N LOC329302 n/a
12 TRCN0000022983 AGGTTGCTGTAGTTAAACTAA pLKO.1 1567 5UTR 100% 5.625 3.938 N LOC381309 n/a
13 TRCN0000022682 GCACCTTACATCCCAGAAGTT pLKO.1 2364 CDS 100% 4.950 3.465 N Cdc42bpa n/a
14 TRCN0000022681 GCATCTAACATCTTAACAGAA pLKO.1 4011 CDS 100% 4.950 3.465 N Cdc42bpa n/a
15 TRCN0000000660 GCGATTACATAGAGAAGACTT pLKO.1 1350 5UTR 100% 4.950 3.465 N CDC42BPA n/a
16 TRCN0000001331 GCGATTACATAGAGAAGACTT pLKO.1 1350 5UTR 100% 4.950 3.465 N CDC42BPA n/a
17 TRCN0000022982 CCTGAAGAGATGGCTCGGTTT pLKO.1 1818 CDS 100% 4.050 2.835 N LOC381309 n/a
18 TRCN0000022683 GCACAGGAAGTTTAAGGAGAT pLKO.1 5246 CDS 100% 4.050 2.835 N Cdc42bpa n/a
19 TRCN0000199935 GCTCGCCATGTCCGAGATAAG pLKO.1 3087 CDS 100% 3.600 2.520 N CDC42BPA n/a
20 TRCN0000196514 GTGGAATTGATTGGGATAATA pLKO.1 2329 CDS 100% 15.000 10.500 N CDC42BPA n/a
21 TRCN0000096439 GCAGCAGGAAAGAGAAGAATT pLKO.1 2918 CDS 100% 0.000 0.000 Y Hivep3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017320146.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.