Transcript: Mouse XM_017322066.1

PREDICTED: Mus musculus basic leucine zipper and W2 domains 1 (Bzw1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bzw1 (66882)
Length:
3296
CDS:
1..1008

Additional Resources:

NCBI RefSeq record:
XM_017322066.1
NBCI Gene record:
Bzw1 (66882)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017322066.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096897 CCTTAATGCATCCATTCTTAA pLKO.1 234 CDS 100% 13.200 18.480 N Bzw1 n/a
2 TRCN0000312065 CCTTAATGCATCCATTCTTAA pLKO_005 234 CDS 100% 13.200 18.480 N Bzw1 n/a
3 TRCN0000096896 CCATTCTTAACAGCCTTTATA pLKO.1 245 CDS 100% 15.000 10.500 N Bzw1 n/a
4 TRCN0000312120 CCATTCTTAACAGCCTTTATA pLKO_005 245 CDS 100% 15.000 10.500 N Bzw1 n/a
5 TRCN0000096895 CCCATTCTGAAGTGGTATAAA pLKO.1 874 CDS 100% 15.000 10.500 N Bzw1 n/a
6 TRCN0000312121 CCCATTCTGAAGTGGTATAAA pLKO_005 874 CDS 100% 15.000 10.500 N Bzw1 n/a
7 TRCN0000379243 TAAACAAAGTGTTGAGCATTT pLKO_005 414 CDS 100% 10.800 7.560 N Bzw1 n/a
8 TRCN0000377034 CCAGTGGTCATTGGGATAGTC pLKO_005 616 CDS 100% 4.950 3.465 N Bzw1 n/a
9 TRCN0000147346 GCAGAAACACTCTTTGACATT pLKO.1 36 CDS 100% 4.950 3.465 N BZW1 n/a
10 TRCN0000096894 CCCTATATCAAGCATGATATA pLKO.1 1098 3UTR 100% 1.320 0.924 N Bzw1 n/a
11 TRCN0000363710 CCCTATATCAAGCATGATATA pLKO_005 1098 3UTR 100% 1.320 0.924 N Bzw1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017322066.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11404 pDONR223 100% 73.3% 73.2% None (many diffs) n/a
2 ccsbBroad304_11404 pLX_304 0% 73.3% 73.2% V5 (many diffs) n/a
3 TRCN0000469255 GCAGAAGTTCGCACTTAGGCTCTG pLX_317 39.7% 73.3% 73.2% V5 (many diffs) n/a
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