Transcript: Human XM_024447143.1

PREDICTED: Homo sapiens neuregulin 1 (NRG1), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NRG1 (3084)
Length:
9652
CDS:
518..2338

Additional Resources:

NCBI RefSeq record:
XM_024447143.1
NBCI Gene record:
NRG1 (3084)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024447143.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416939 GGCTGATTCTGGAGAGTATAT pLKO_005 829 CDS 100% 13.200 9.240 N NRG1 n/a
2 TRCN0000058304 CGGTGTGAAACCAGTTCTGAA pLKO.1 683 CDS 100% 4.950 3.465 N NRG1 n/a
3 TRCN0000058307 TCATGGTGAAAGACCTTTCAA pLKO.1 1005 CDS 100% 0.563 0.394 N NRG1 n/a
4 TRCN0000444018 GACAGTGCCTCTGCCAATATC pLKO_005 878 CDS 100% 13.200 7.920 N NRG1 n/a
5 TRCN0000204533 CCTCCCAAAGTGCTGGAATTA pLKO.1 9316 3UTR 100% 13.200 6.600 Y LRRC74B n/a
6 TRCN0000073773 CCTCTCAAGTAGCTGGGACTA pLKO.1 9166 3UTR 100% 4.050 2.025 Y TINAGL1 n/a
7 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 9171 3UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024447143.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15442 pDONR223 0% 31.2% 27.8% None (many diffs) n/a
2 ccsbBroad304_15442 pLX_304 0% 31.2% 27.8% V5 (many diffs) n/a
3 TRCN0000474665 AGGGGATGGAGGTTCGACCCTCTC pLX_317 66.2% 31.2% 27.8% V5 (many diffs) n/a
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