Transcript: Human XM_024448932.1

PREDICTED: Homo sapiens MGAT4 family member C (MGAT4C), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MGAT4C (25834)
Length:
1876
CDS:
401..1846

Additional Resources:

NCBI RefSeq record:
XM_024448932.1
NBCI Gene record:
MGAT4C (25834)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024448932.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425974 TGGACTTCTTAGCCAATTAAA pLKO_005 1835 CDS 100% 15.000 21.000 N MGAT4C n/a
2 TRCN0000424315 TTTCAGCACATGGGCTATTAT pLKO_005 1334 CDS 100% 15.000 21.000 N MGAT4C n/a
3 TRCN0000036356 CCAATCCTAGATGGCCTTAAA pLKO.1 947 CDS 100% 13.200 18.480 N MGAT4C n/a
4 TRCN0000431674 GGCTAATTATTAGGAGTATTA pLKO_005 1809 CDS 100% 13.200 18.480 N MGAT4C n/a
5 TRCN0000036354 CGCACCATATTATTGCAGGAA pLKO.1 891 CDS 100% 2.640 3.696 N MGAT4C n/a
6 TRCN0000412490 GCCAATACTTCAGACTATTAT pLKO_005 1049 CDS 100% 15.000 10.500 N MGAT4C n/a
7 TRCN0000416652 ACATGCTCCAGAGGAGTATTA pLKO_005 925 CDS 100% 13.200 9.240 N MGAT4C n/a
8 TRCN0000036358 CCACCTTCAACAGGAGATGTT pLKO.1 1523 CDS 100% 4.950 3.465 N MGAT4C n/a
9 TRCN0000036355 CCTAGCAAACAAAGGAGACAA pLKO.1 1664 CDS 100% 4.950 3.465 N MGAT4C n/a
10 TRCN0000036357 GTGTCATTCTTGGGAGTTCTT pLKO.1 485 CDS 100% 4.950 3.465 N MGAT4C n/a
11 TRCN0000193633 CCTAGAAGGAACTTACTGGAA pLKO.1 1138 CDS 100% 2.640 1.584 N Phactr3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024448932.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07949 pDONR223 100% 99.3% 99.1% None 1_9delATGAAGAGA;1292C>G n/a
2 ccsbBroad304_07949 pLX_304 0% 99.3% 99.1% V5 1_9delATGAAGAGA;1292C>G n/a
3 TRCN0000477425 GGGGGGGACAGCACGACATCACTG pLX_317 22.7% 99.3% 99.1% V5 1_9delATGAAGAGA;1292C>G n/a
Download CSV