Transcript: Human XM_024451487.1

PREDICTED: Homo sapiens zinc finger protein 284 (ZNF284), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF284 (342909)
Length:
2179
CDS:
148..1821

Additional Resources:

NCBI RefSeq record:
XM_024451487.1
NBCI Gene record:
ZNF284 (342909)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024451487.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239497 TTTATGGGTTACAGCATATTT pLKO_005 1834 3UTR 100% 15.000 21.000 N ZNF284 n/a
2 TRCN0000239498 AGAGAAGAAGAACTGTATAAA pLKO_005 1303 CDS 100% 15.000 10.500 N ZNF284 n/a
3 TRCN0000239500 GATGTGATACCTGTAGTAATA pLKO_005 986 CDS 100% 13.200 9.240 N ZNF284 n/a
4 TRCN0000239499 TCTGAGCATGGGAAGTGTAAA pLKO_005 478 CDS 100% 13.200 9.240 N ZNF284 n/a
5 TRCN0000239496 CACTTGTAGGCAAGATCTTTG pLKO_005 1095 CDS 100% 10.800 7.560 N ZNF284 n/a
6 TRCN0000012966 CGGGAGAGAGACCTTATAATT pLKO.1 1388 CDS 100% 15.000 7.500 Y ZNF155 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024451487.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01821 pDONR223 100% 69.2% 60.9% None (many diffs) n/a
2 ccsbBroad304_01821 pLX_304 0% 69.2% 60.9% V5 (many diffs) n/a
3 TRCN0000468268 AGACCACTGATCAAGATCTATTTA pLX_317 18.1% 69.2% 60.9% V5 (many diffs) n/a
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