Transcript: Human XM_024452261.1

PREDICTED: Homo sapiens synaptonemal complex central element protein 3 (SYCE3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SYCE3 (644186)
Length:
681
CDS:
282..548

Additional Resources:

NCBI RefSeq record:
XM_024452261.1
NBCI Gene record:
SYCE3 (644186)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024452261.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000269630 ATGGAGAAGAACTGGCAAGAG pLKO_005 498 CDS 100% 4.050 2.835 N SYCE3 n/a
2 TRCN0000269677 CAGATCTGAATAAGGACTTGG pLKO_005 337 CDS 100% 4.050 2.835 N SYCE3 n/a
3 TRCN0000269628 GCTATTAGAAGAGATGGAGAA pLKO_005 362 CDS 100% 4.050 2.835 N SYCE3 n/a
4 TRCN0000269629 GGCCTATGACATGGTGGTGAT pLKO_005 407 CDS 100% 4.050 2.835 N SYCE3 n/a
5 TRCN0000284053 AGGATGCCTTCGTCAACTGCA pLKO_005 469 CDS 100% 2.640 1.848 N SYCE3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024452261.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05718 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05718 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479872 ATCGCTTTTACCTCCGCAGCCCTC pLX_317 100% 100% 100% V5 n/a
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