Transcript: Human XR_001738950.1

PREDICTED: Homo sapiens calmodulin-lysine N-methyltransferase (CAMKMT), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CAMKMT (79823)
Length:
1690
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738950.1
NBCI Gene record:
CAMKMT (79823)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738950.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148644 CGATGGGATAATGAGACAGAT pLKO.1 870 3UTR 100% 4.950 3.960 N CAMKMT n/a
2 TRCN0000129144 GCCTGTCTGTGACTTGAATTT pLKO.1 1467 3UTR 100% 13.200 9.240 N CAMKMT n/a
3 TRCN0000150045 CTGTTAACTGATGGGAATGAA pLKO.1 762 3UTR 100% 5.625 3.938 N CAMKMT n/a
4 TRCN0000146916 CCCTAAACCTTTGTTTGTCTT pLKO.1 1430 3UTR 100% 4.950 3.465 N CAMKMT n/a
5 TRCN0000147167 CCTGAATACAGTATCTCCTTA pLKO.1 583 3UTR 100% 4.950 3.465 N CAMKMT n/a
6 TRCN0000150140 GACTTGAATTTGACTGGTGAA pLKO.1 1477 3UTR 100% 4.050 2.835 N CAMKMT n/a
7 TRCN0000129525 GTCTCTCAACTGGAAGGACAT pLKO.1 891 3UTR 100% 4.050 2.835 N CAMKMT n/a
8 TRCN0000148319 CCATCAGAAATGTGCAAGACA pLKO.1 787 3UTR 100% 3.000 2.100 N CAMKMT n/a
9 TRCN0000129944 GAAGAAACGTATCAAGTGCAT pLKO.1 1233 3UTR 100% 2.640 1.848 N CAMKMT n/a
10 TRCN0000130103 CTACTGCCTCAAGCACAATAA pLKO.1 702 3UTR 100% 13.200 6.600 Y CAMKMT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738950.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08965 pDONR223 100% 52.3% None (many diffs) n/a
2 ccsbBroad304_08965 pLX_304 0% 52.3% V5 (many diffs) n/a
3 TRCN0000469789 GGCCGAATCTCGTCAGTGTGCGTT pLX_317 41.6% 52.3% V5 (many diffs) n/a
4 ccsbBroadEn_15993 pDONR223 0% 22.7% None (many diffs) n/a
5 ccsbBroad304_15993 pLX_304 0% 22.7% V5 (many diffs) n/a
6 TRCN0000474446 CCTTTAGGCTTATCGCACCGGAAC pLX_317 97.3% 22.7% V5 (many diffs) n/a
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