Transcript: Human XR_001742164.1

PREDICTED: Homo sapiens CCR4-NOT transcription complex subunit 6 (CNOT6), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CNOT6 (57472)
Length:
6028
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001742164.1
NBCI Gene record:
CNOT6 (57472)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001742164.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000050614 CCAGGATATATTGAACCTTTA pLKO.1 765 3UTR 100% 10.800 15.120 N CNOT6 n/a
2 TRCN0000299414 CCAGGATATATTGAACCTTTA pLKO_005 765 3UTR 100% 10.800 15.120 N CNOT6 n/a
3 TRCN0000050617 CAAGGGTATAATAGACTACAT pLKO.1 1654 3UTR 100% 4.950 6.930 N CNOT6 n/a
4 TRCN0000299490 CAAGGGTATAATAGACTACAT pLKO_005 1654 3UTR 100% 4.950 6.930 N CNOT6 n/a
5 TRCN0000050616 GCGCATCTTTGTGGTCACTAA pLKO.1 497 3UTR 100% 4.950 6.930 N CNOT6 n/a
6 TRCN0000331657 GCGCATCTTTGTGGTCACTAA pLKO_005 497 3UTR 100% 4.950 6.930 N CNOT6 n/a
7 TRCN0000050613 GCTTTGCATTTGAGTGACAAT pLKO.1 529 3UTR 100% 4.950 3.960 N CNOT6 n/a
8 TRCN0000299491 GCTTTGCATTTGAGTGACAAT pLKO_005 529 3UTR 100% 4.950 3.960 N CNOT6 n/a
9 TRCN0000050615 GCAACCTCAAATCCAGTGTTT pLKO.1 1371 3UTR 100% 4.950 3.465 N CNOT6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001742164.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12348 pDONR223 96.2% 4.5% None 1_3880del;4157_6028del n/a
2 ccsbBroad304_12348 pLX_304 0% 4.5% V5 (not translated due to prior stop codon) 1_3880del;4157_6028del n/a
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