Transcript: Mouse XR_001779069.1

PREDICTED: Mus musculus intraflagellar transport 46 (Ift46), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ift46 (76568)
Length:
1718
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001779069.1
NBCI Gene record:
Ift46 (76568)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001779069.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123567 GCAGCATAATATTACGCAACA pLKO.1 850 3UTR 100% 4.050 5.670 N Ift46 n/a
2 TRCN0000332036 GCAGCATAATATTACGCAACA pLKO_005 850 3UTR 100% 4.050 5.670 N Ift46 n/a
3 TRCN0000123565 CCTGGACATTCCTTTCTATAA pLKO.1 1225 3UTR 100% 13.200 9.240 N Ift46 n/a
4 TRCN0000332106 CCTGGACATTCCTTTCTATAA pLKO_005 1225 3UTR 100% 13.200 9.240 N Ift46 n/a
5 TRCN0000123566 CCTGGCTGAGTACATTGACAT pLKO.1 1192 3UTR 100% 4.950 3.465 N Ift46 n/a
6 TRCN0000332035 CCTGGCTGAGTACATTGACAT pLKO_005 1192 3UTR 100% 4.950 3.465 N Ift46 n/a
7 TRCN0000123568 GCCGAGATCAAGGAGCTCTTT pLKO.1 608 3UTR 100% 4.950 3.465 N Ift46 n/a
8 TRCN0000332038 GCCGAGATCAAGGAGCTCTTT pLKO_005 608 3UTR 100% 4.950 3.465 N Ift46 n/a
9 TRCN0000123564 GCTTCAAAGTTAGATGAAGAT pLKO.1 1421 3UTR 100% 0.495 0.347 N Ift46 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001779069.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03755 pDONR223 100% 45.3% None (many diffs) n/a
2 ccsbBroad304_03755 pLX_304 0% 45.3% V5 (many diffs) n/a
3 TRCN0000468978 GTAACTTCACCTCATTCCCCCTCT pLX_317 42.8% 45.3% V5 (many diffs) n/a
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