Transcript: Mouse XR_001780554.1

PREDICTED: Mus musculus predicted gene 9222 (Gm9222), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm9222 (668525)
Length:
2363
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780554.1
NBCI Gene record:
Gm9222 (668525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780554.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243550 TATTGAAGGACGTTGTCATAG pLKO_005 973 3UTR 100% 10.800 7.560 N Gm9222 n/a
2 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1616 3UTR 100% 15.000 7.500 Y ZNF443 n/a
3 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1616 3UTR 100% 15.000 7.500 Y Zfp97 n/a
4 TRCN0000243552 ACTGGAACCTCACTGTTATAG pLKO_005 930 3UTR 100% 13.200 6.600 Y Gm9222 n/a
5 TRCN0000243549 CCCAGAAGAGTCTCTACAAAG pLKO_005 891 3UTR 100% 10.800 5.400 Y Gm9222 n/a
6 TRCN0000218901 GCCCTATGAATGTAATCAATG pLKO_005 2293 3UTR 100% 10.800 5.400 Y ENSMUSG00000069586 n/a
7 TRCN0000095843 GAGGATGCAGTGACTTATGAT pLKO.1 821 3UTR 100% 5.625 2.813 Y 2410018L13Rik n/a
8 TRCN0000095841 CCTACTGGAACCTCACTGTTA pLKO.1 927 3UTR 100% 4.950 2.475 Y 2410018L13Rik n/a
9 TRCN0000093246 CGAGACCCATGAGGACTACAA pLKO.1 733 3UTR 100% 4.950 2.475 Y 1700030C10Rik n/a
10 TRCN0000243553 GAGACCCATGAGGACTACAAG pLKO_005 734 3UTR 100% 4.950 2.475 Y Gm9222 n/a
11 TRCN0000093238 GAGTCTCTACAAAGATGTGAT pLKO.1 898 3UTR 100% 4.950 2.475 Y Gm4983 n/a
12 TRCN0000096028 TCACTGTTATAGGCTACACTT pLKO.1 939 3UTR 100% 4.950 2.475 Y n/a
13 TRCN0000096025 GTGACTTATGATGATGTGCAT pLKO.1 830 3UTR 100% 2.640 1.320 Y n/a
14 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 1198 3UTR 100% 13.200 6.600 Y Zfp977 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780554.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.