Transcript: Mouse XR_001783068.1

PREDICTED: Mus musculus diphosphoinositol pentakisphosphate kinase 1 (Ppip5k1), transcript variant X42, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ppip5k1 (327655)
Length:
5010
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001783068.1
NBCI Gene record:
Ppip5k1 (327655)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001783068.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000439479 GTTCGAACTCGGCTCTATTTC pLKO_005 1509 3UTR 100% 13.200 18.480 N Ppip5k1 n/a
2 TRCN0000418964 TTACTTCTGCCAGCGCTTATA pLKO_005 4139 3UTR 100% 13.200 18.480 N Ppip5k1 n/a
3 TRCN0000416155 AGCCGAGTTACTCCGTCTTTC pLKO_005 1295 3UTR 100% 10.800 15.120 N Ppip5k1 n/a
4 TRCN0000428411 GGGCGCTATGATATCAGTAAG pLKO_005 1206 3UTR 100% 10.800 15.120 N PPIP5K1 n/a
5 TRCN0000178466 GCGCTATGATATCAGTAAGAT pLKO.1 1208 3UTR 100% 5.625 7.875 N Ppip5k1 n/a
6 TRCN0000217896 GGTCACTTCTCAGGTATTAAT pLKO.1 465 3UTR 100% 15.000 12.000 N Ppip5k1 n/a
7 TRCN0000181385 CCCAAGAGGTTTGTCCTTATA pLKO.1 4849 3UTR 100% 13.200 10.560 N Ppip5k1 n/a
8 TRCN0000435906 GCCATGGAGTGGGAATCATAG pLKO_005 4209 3UTR 100% 10.800 7.560 N Ppip5k1 n/a
9 TRCN0000181384 CCCAGTGATGTAAACACTGAA pLKO.1 3924 3UTR 100% 0.495 0.347 N Ppip5k1 n/a
10 TRCN0000198957 GATCAGGTATTTGCCCTGATT pLKO.1 1050 3UTR 100% 0.495 0.347 N Ppip5k1 n/a
11 TRCN0000182288 GAGGTCTCTGAGGAGATTGAT pLKO.1 3843 3UTR 100% 5.625 3.375 N Ppip5k1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001783068.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11402 pDONR223 100% 21.6% None (many diffs) n/a
2 ccsbBroad304_11402 pLX_304 0% 21.6% V5 (many diffs) n/a
3 TRCN0000480975 CACTCCTTTAGCACTTATAGATCG pLX_317 16.6% 21.6% V5 (many diffs) n/a
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