Transcript: Mouse XR_001784123.1

PREDICTED: Mus musculus CDC42 binding protein kinase alpha (Cdc42bpa), transcript variant X27, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cdc42bpa (226751)
Length:
8377
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784123.1
NBCI Gene record:
Cdc42bpa (226751)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360802 AGCCCGACAGATACGTCAAAT pLKO_005 2232 3UTR 100% 13.200 18.480 N Cdc42bpa n/a
2 TRCN0000022979 CCAGGATGACAATAACTTATA pLKO.1 1574 3UTR 100% 13.200 18.480 N LOC381309 n/a
3 TRCN0000022679 GCCCGACAGATACGTCAAATT pLKO.1 2233 3UTR 100% 13.200 18.480 N Cdc42bpa n/a
4 TRCN0000022971 GTCTTTACGATGAATGCAATA pLKO.1 1252 3UTR 100% 10.800 15.120 N LOC329302 n/a
5 TRCN0000022980 GATAAAGTATTCGCCATGAAA pLKO.1 1440 3UTR 100% 5.625 7.875 N LOC381309 n/a
6 TRCN0000022680 GCCGCTGCAATCATAGATCAT pLKO.1 4845 3UTR 100% 4.950 6.930 N Cdc42bpa n/a
7 TRCN0000360798 CCGAGAGCAGAGCGAACATTA pLKO_005 3086 3UTR 100% 13.200 10.560 N Cdc42bpa n/a
8 TRCN0000360799 AGTAAACCCTCACGAATTAAA pLKO_005 6490 3UTR 100% 15.000 10.500 N Cdc42bpa n/a
9 TRCN0000195596 CCAGGCTAGTGAGCGATTAAA pLKO.1 2798 3UTR 100% 15.000 10.500 N CDC42BPA n/a
10 TRCN0000022981 GAGAGGGATGTGTTGGTAAAT pLKO.1 1515 3UTR 100% 13.200 9.240 N LOC381309 n/a
11 TRCN0000022972 GTAGACATCGTAAGGGCATTT pLKO.1 1092 3UTR 100% 10.800 7.560 N LOC329302 n/a
12 TRCN0000022983 AGGTTGCTGTAGTTAAACTAA pLKO.1 1411 3UTR 100% 5.625 3.938 N LOC381309 n/a
13 TRCN0000022682 GCACCTTACATCCCAGAAGTT pLKO.1 2208 3UTR 100% 4.950 3.465 N Cdc42bpa n/a
14 TRCN0000022681 GCATCTAACATCTTAACAGAA pLKO.1 3855 3UTR 100% 4.950 3.465 N Cdc42bpa n/a
15 TRCN0000000660 GCGATTACATAGAGAAGACTT pLKO.1 1352 3UTR 100% 4.950 3.465 N CDC42BPA n/a
16 TRCN0000001331 GCGATTACATAGAGAAGACTT pLKO.1 1352 3UTR 100% 4.950 3.465 N CDC42BPA n/a
17 TRCN0000022982 CCTGAAGAGATGGCTCGGTTT pLKO.1 1662 3UTR 100% 4.050 2.835 N LOC381309 n/a
18 TRCN0000022683 GCACAGGAAGTTTAAGGAGAT pLKO.1 5198 3UTR 100% 4.050 2.835 N Cdc42bpa n/a
19 TRCN0000199935 GCTCGCCATGTCCGAGATAAG pLKO.1 2931 3UTR 100% 3.600 2.520 N CDC42BPA n/a
20 TRCN0000196514 GTGGAATTGATTGGGATAATA pLKO.1 2173 3UTR 100% 15.000 10.500 N CDC42BPA n/a
21 TRCN0000096439 GCAGCAGGAAAGAGAAGAATT pLKO.1 2762 3UTR 100% 0.000 0.000 Y Hivep3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.