Transcript: Human XR_002956251.1

PREDICTED: Homo sapiens mitochondrial import receptor subunit TOM5 homolog pseudogene (LOC107986373), misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC107986373 (107986373)
Length:
583
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956251.1
NBCI Gene record:
LOC107986373 (107986373)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956251.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136270 GCTCTGGTAACTGATCTTAAT pLKO.1 393 3UTR 100% 13.200 6.600 Y SERF1A n/a
2 TRCN0000144507 CGAGTCACTCCATTTATCTTA pLKO.1 211 3UTR 100% 5.625 2.813 Y TOMM5 n/a
3 TRCN0000145022 GAGACTCTTTGAATGGACATA pLKO.1 344 3UTR 100% 4.950 2.475 Y TOMM5 n/a
4 TRCN0000136833 GCAAGTAAATAGGCCCAGAAA pLKO.1 316 3UTR 100% 4.950 2.475 Y SERF1A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956251.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05647 pDONR223 100% 23.3% None (many diffs) n/a
2 ccsbBroad304_05647 pLX_304 0% 23.3% V5 (many diffs) n/a
3 TRCN0000479412 TATCCTGTCCGACTTTCCCACACA pLX_317 100% 23.3% V5 (many diffs) n/a
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