Transcript: Human XR_002957206.1

PREDICTED: Homo sapiens diacylglycerol kinase zeta (DGKZ), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DGKZ (8525)
Length:
4445
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957206.1
NBCI Gene record:
DGKZ (8525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957206.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000000668 TCGCACAGGATGAGATTTATA pLKO.1 3179 3UTR 100% 15.000 21.000 N DGKZ n/a
2 TRCN0000199594 GCGCTGGAGATGTACCGCAAA pLKO.1 1861 3UTR 100% 1.350 1.080 N DGKZ n/a
3 TRCN0000010535 AGATGAGCCTGTGTCCAAGAT pLKO.1 2046 3UTR 100% 4.950 3.465 N DGKZ n/a
4 TRCN0000194899 CCTCAACTATGTGACTGAGAT pLKO.1 3159 3UTR 100% 4.950 3.465 N DGKZ n/a
5 TRCN0000196343 GAAGATAAATTTCCGCTGTAA pLKO.1 1293 3UTR 100% 4.950 3.465 N DGKZ n/a
6 TRCN0000196402 GCTTTCGGAATAAGATGTTCT pLKO.1 2285 3UTR 100% 4.950 3.465 N DGKZ n/a
7 TRCN0000000669 TGTGATGGAATGGACTTGACT pLKO.1 2476 3UTR 100% 3.000 2.100 N DGKZ n/a
8 TRCN0000199672 GCGCACCATCTGCCACTACAT pLKO.1 3661 3UTR 100% 1.650 1.155 N DGKZ n/a
9 TRCN0000199918 GCCTCGCTCATGAAGACAGAC pLKO.1 3695 3UTR 100% 1.350 0.945 N DGKZ n/a
10 TRCN0000199030 CCGGGCTTCCTCCCGGAAACT pLKO.1 4253 3UTR 100% 0.000 0.000 N DGKZ n/a
11 TRCN0000199197 CCCACCTCACTGCCACATTCC pLKO.1 3897 3UTR 100% 0.000 0.000 N DGKZ n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957206.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07252 pDONR223 100% 62.6% None (many diffs) n/a
2 ccsbBroad304_07252 pLX_304 0% 62.6% V5 (many diffs) n/a
3 TRCN0000477876 CTTCAGCCTTCAAATAGGAGTGCC pLX_317 11.2% 62.6% V5 (many diffs) n/a
4 ccsbBroadEn_14900 pDONR223 58.3% 61.4% None (many diffs) n/a
5 ccsbBroad304_14900 pLX_304 0% 61.4% V5 (not translated due to prior stop codon) (many diffs) n/a
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