Transcript: Human XR_002957643.1

PREDICTED: Homo sapiens WD repeat domain 26 (WDR26), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
WDR26 (80232)
Length:
8617
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957643.1
NBCI Gene record:
WDR26 (80232)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139717 CAAAGGGATCGGTGCCTATAT pLKO.1 1292 3UTR 100% 13.200 18.480 N WDR26 n/a
2 TRCN0000339107 CAAAGGGATCGGTGCCTATAT pLKO_005 1292 3UTR 100% 13.200 18.480 N Wdr26 n/a
3 TRCN0000143778 GCACTAAACTAGCAACAGGAT pLKO.1 3228 3UTR 100% 2.640 3.696 N WDR26 n/a
4 TRCN0000122611 GCAGTTCTATCAGTGTGACTT pLKO.1 3532 3UTR 100% 4.950 3.960 N WDR26 n/a
5 TRCN0000276350 GCAGTTCTATCAGTGTGACTT pLKO_005 3532 3UTR 100% 4.950 3.960 N WDR26 n/a
6 TRCN0000176727 CCAAACATTTACACCTTGCTT pLKO.1 4074 3UTR 100% 3.000 2.400 N Wdr26 n/a
7 TRCN0000144564 GTGCCTATATCACAATACCAA pLKO.1 1303 3UTR 100% 3.000 2.400 N WDR26 n/a
8 TRCN0000276293 ACCCATTGAACTCAGTATATA pLKO_005 4197 3UTR 100% 15.000 10.500 N WDR26 n/a
9 TRCN0000144116 CAGTGTGACTTAGATGGTAAT pLKO.1 3542 3UTR 100% 10.800 7.560 N WDR26 n/a
10 TRCN0000144312 CCAGATGACAACTATCTTGTT pLKO.1 3359 3UTR 100% 4.950 3.465 N WDR26 n/a
11 TRCN0000276294 CCAGATGACAACTATCTTGTT pLKO_005 3359 3UTR 100% 4.950 3.465 N WDR26 n/a
12 TRCN0000143268 GAGGCCATAATGAAGACTTCA pLKO.1 3864 3UTR 100% 4.950 3.465 N WDR26 n/a
13 TRCN0000198485 GCTTACCCATTGAACTCAGTA pLKO.1 4193 3UTR 100% 4.950 3.465 N Wdr26 n/a
14 TRCN0000177411 GCTTTGTTAAATGTAGCAACT pLKO.1 3749 3UTR 100% 4.050 2.835 N Wdr26 n/a
15 TRCN0000339168 GCTTTGTTAAATGTAGCAACT pLKO_005 3749 3UTR 100% 4.050 2.835 N Wdr26 n/a
16 TRCN0000339169 CCAAATCTTTCCGCCTTATTT pLKO_005 4397 3UTR 100% 15.000 9.000 N Wdr26 n/a
17 TRCN0000155187 GAGATGAGGTTTCACCATGTT pLKO.1 1691 3UTR 100% 4.950 2.475 Y GTF2IRD2B n/a
18 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1764 3UTR 100% 5.625 2.813 Y KLHL30 n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1764 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957643.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.