Transcript: Human XR_002958185.1

PREDICTED: Homo sapiens solute carrier family 66 member 2 (SLC66A2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC66A2 (80148)
Length:
3724
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958185.1
NBCI Gene record:
SLC66A2 (80148)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958185.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426935 GACCAGTGGTGACGCCTTCAA pLKO_005 1982 3UTR 100% 1.650 2.310 N SLC66A2 n/a
2 TRCN0000418897 ACGCCTTCAAGACGGCCTACT pLKO_005 1993 3UTR 100% 1.350 1.080 N SLC66A2 n/a
3 TRCN0000157337 CATCACCTACCTGTCCATTGA pLKO.1 736 3UTR 100% 4.950 3.465 N SLC66A2 n/a
4 TRCN0000152812 GCAGATAGCAAGGATGAAGAA pLKO.1 599 3UTR 100% 4.950 3.465 N SLC66A2 n/a
5 TRCN0000444813 TCCATTGACTCCGCCCTGTTT pLKO_005 749 3UTR 100% 4.950 3.465 N SLC66A2 n/a
6 TRCN0000420717 AGGATGAAGAAGTCAAGGTTG pLKO_005 609 3UTR 100% 4.050 2.835 N SLC66A2 n/a
7 TRCN0000438366 AGAGCGCCATCATGATCCTGA pLKO_005 498 3UTR 100% 2.640 1.848 N SLC66A2 n/a
8 TRCN0000439309 ATGGTGCTCATGTGGACCAGT pLKO_005 1968 3UTR 100% 2.640 1.848 N SLC66A2 n/a
9 TRCN0000156320 CTACATCACCTACCTGTCCAT pLKO.1 733 3UTR 100% 2.640 1.848 N SLC66A2 n/a
10 TRCN0000156750 GCCTGAAGCAAATTCCTGAGT pLKO.1 3161 3UTR 100% 2.640 1.848 N SLC66A2 n/a
11 TRCN0000437131 AGTATCGGGACATTCGCAGGA pLKO_005 291 3UTR 100% 2.160 1.512 N SLC66A2 n/a
12 TRCN0000423240 GACATTCGCAGGACGCAGAAC pLKO_005 299 3UTR 100% 1.350 0.945 N SLC66A2 n/a
13 TRCN0000200254 CTTCAAGACGGCCTACTTCTT pLKO.1 1997 3UTR 100% 4.950 3.465 N Pqlc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958185.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04177 pDONR223 100% 21.8% None (many diffs) n/a
2 ccsbBroad304_04177 pLX_304 0% 21.8% V5 (many diffs) n/a
3 TRCN0000479482 GGTCTCTGCTCCGCCTTTGCGGCG pLX_317 38.9% 21.8% V5 (many diffs) n/a
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