Transcript: Human XR_002958760.1

PREDICTED: Homo sapiens B cell receptor associated protein 31 (BCAP31), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BCAP31 (10134)
Length:
2230
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958760.1
NBCI Gene record:
BCAP31 (10134)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958760.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242711 ATCGATGCCGTGCGCGAAATT pLKO_005 412 3UTR 100% 13.200 18.480 N BCAP31 n/a
2 TRCN0000012419 GCCTCCAATGAAGCCTTTAAA pLKO.1 613 3UTR 100% 15.000 10.500 N Bcap31 n/a
3 TRCN0000278073 GCCTCCAATGAAGCCTTTAAA pLKO_005 613 3UTR 100% 15.000 10.500 N Bcap31 n/a
4 TRCN0000242710 GACGCCTGGTGACTCTCATTT pLKO_005 572 3UTR 100% 13.200 9.240 N BCAP31 n/a
5 TRCN0000242709 CCTATGGCAACACCTTCTTTG pLKO_005 359 3UTR 100% 10.800 7.560 N BCAP31 n/a
6 TRCN0000242708 TCCTCTATGCGGAGGTCTTTG pLKO_005 254 3UTR 100% 10.800 7.560 N BCAP31 n/a
7 TRCN0000242712 TACACGTTCAGAATGCGTTTG pLKO_005 1982 3UTR 100% 6.000 4.200 N BCAP31 n/a
8 TRCN0000179092 CATGGACAAGAAGGAAGAGTA pLKO.1 1769 3UTR 100% 4.950 3.465 N BCAP31 n/a
9 TRCN0000179186 GAATCTCTACATTGCTGGCTT pLKO.1 525 3UTR 100% 2.640 1.848 N BCAP31 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958760.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02326 pDONR223 100% 33% None 1_222del;824_1650del;1788_2230del n/a
2 ccsbBroad304_02326 pLX_304 0% 33% V5 1_222del;824_1650del;1788_2230del n/a
3 TRCN0000481258 GAGCAGAGCGCCCAGACGTTGTCA pLX_317 51.9% 33% V5 1_222del;824_1650del;1788_2230del n/a
4 ccsbBroadEn_15694 pDONR223 0% 33% None (many diffs) n/a
5 ccsbBroad304_15694 pLX_304 0% 33% V5 (many diffs) n/a
6 TRCN0000474561 AACAGTTCAGGTCACCGGCGTCGC pLX_317 64.2% 33% V5 (many diffs) n/a
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