Transcript: Human XR_002958853.1

PREDICTED: Homo sapiens putative POM121-like protein 1 (LOC102724151), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC102724151 (102724151)
Length:
2152
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958853.1
NBCI Gene record:
LOC102724151 (102724151)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958853.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162242 CAGAGGTCAGAAATCAGATAT pLKO.1 776 3UTR 100% 13.200 6.600 Y POM121L9P n/a
2 TRCN0000189224 GACTCAGCAGCAACACCAAAT pLKO.1 2007 3UTR 100% 10.800 5.400 Y POM121L8P n/a
3 TRCN0000163328 CCAGAGGTCAGAAATCAGATA pLKO.1 775 3UTR 100% 4.950 2.475 Y POM121L9P n/a
4 TRCN0000166031 CCCAGAGGTCAGAAATCAGAT pLKO.1 774 3UTR 100% 4.950 2.475 Y POM121L9P n/a
5 TRCN0000165033 GTCCAAGAGAATCCTGGTGAT pLKO.1 635 3UTR 100% 4.050 2.025 Y POM121L9P n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958853.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10587 pDONR223 100% 58.1% None (many diffs) n/a
2 ccsbBroad304_10587 pLX_304 0% 58.1% V5 (many diffs) n/a
3 TRCN0000472538 GCTGGAAACCAGACTTGAAGCAAA pLX_317 39.6% 58.1% V5 (many diffs) n/a
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