Construct: ORF ccsbBroadEn_10587
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009081.1_s300c1, BRDN0000394728
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- POM121L4P (266697)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102724151 | LOC102724151 | putative POM121-like protein 1 | XM_017030129.2 | 90.3% | 87.6% | (many diffs) |
| 2 | human | 101929738 | LOC101929738 | putative POM121-like protein 1 | XM_017029167.2 | 90.1% | 87.6% | (many diffs) |
| 3 | human | 102724728 | LOC102724728 | POM121 transmembrane nucleo... | NR_136575.1 | 66.6% | (many diffs) | |
| 4 | human | 266697 | POM121L4P | POM121 transmembrane nucleo... | NR_024592.1 | 59% | (many diffs) | |
| 5 | human | 102724151 | LOC102724151 | putative POM121-like protein 1 | XR_002958853.1 | 58.1% | (many diffs) | |
| 6 | human | 102724151 | LOC102724151 | putative POM121-like protein 1 | XR_001756147.2 | 49.9% | (many diffs) | |
| 7 | human | 112268346 | LOC112268346 | putative POM121-like protei... | XM_024452586.1 | 44.8% | 34.4% | (many diffs) |
| 8 | human | 107987432 | LOC107987432 | putative POM121-like protei... | XM_024452587.1 | 44.8% | 34.4% | (many diffs) |
| 9 | human | 112268347 | LOC112268347 | putative POM121-like protei... | XM_024452588.1 | 44.8% | 34.4% | (many diffs) |
| 10 | human | 100652833 | LOC100652833 | putative POM121-like protei... | XM_011543783.2 | 39.3% | 31.3% | (many diffs) |
| 11 | human | 102724995 | LOC102724995 | POM121 transmembrane nucleo... | NR_160659.1 | 35.4% | (many diffs) | |
| 12 | human | 107987433 | LOC107987433 | putative POM121-like protei... | XM_017030248.1 | 33.8% | 25.1% | (many diffs) |
| 13 | human | 25812 | POM121L1P | POM121 transmembrane nucleo... | NR_024591.1 | 31.3% | (many diffs) | |
| 14 | human | 112268330 | LOC112268330 | putative POM121-like protei... | XR_002958928.1 | 26.1% | (many diffs) | |
| 15 | human | 646652 | LOC646652 | integral membrane glycoprot... | NR_157803.1 | 25.6% | (many diffs) | |
| 16 | human | 29774 | POM121L9P | POM121 transmembrane nucleo... | NR_003714.1 | 23.9% | (many diffs) | |
| 17 | human | 101929599 | LOC101929599 | putative POM121-like protei... | NR_157804.1 | 23.7% | (many diffs) | |
| 18 | human | 441081 | LOC441081 | POM121 membrane glycoprotei... | NR_073404.1 | 22.2% | (many diffs) | |
| 19 | human | 29797 | POM121L8P | POM121 transmembrane nucleo... | NR_024583.1 | 16.2% | (many diffs) | |
| 20 | human | 646074 | POM121L10P | POM121 transmembrane nucleo... | NR_024593.1 | 13% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1353
- ORF length:
- 1284
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACTCTCTG TGGGGCCCAG GAGCTGGGAG TCACCCCTTT GGGGTCCACA 121 ACAGCCGGCT GTCCCCAGAC TTGTGTCCAG GGAAGATAGT GTTGAGGGCC CTCAAGGAGA 181 GCGGGGCAGG GATGCCTGAG CAGGACAAGG ACCCTAGAGT CCAAGAGAAT CCTGGTGATC 241 AGAGAAGGGT CCCCGAGGTC ACCGGGGATG CACCGTCTGC ATTTCGGCCC CTGCGGGACA 301 ATGGAGGCCT CTCTCCCTTT GTGCCCGGGC CCGGGCCTCT GCAGACAGAC CTCCATGCCC 361 AGAGGTCAGA AATCAGATAT AACCAGACAT CCCAGACCTC CTGGACGAGC TCCTGCACCA 421 ACCGAAATGC CATCTCCAGC TCCTACAGCT CCACGGGAGG CTTGCCGGGG CTAAAGCGGA 481 GGAGGGGGCC AGCCTCATCC CACTGCCAGC TGACCCTCAG TTCCTCAAAG ACAGTGAGTG 541 AGGACAGGCC TCAGGCTGTC TCTTCGGGTC ACACCCAGTG TGAAAAGGTG GCAGAGATAG 601 CACCAGGGCA GACACTCGCC CTCAGGAATG ACTCCTCCAG ATCCGAGGCC TCTAGGCCCA 661 GTACACGCAA GTTTCCCCTG CTGCCACGCA GGCGAGGGGA GCCTTTGATG CTGCCACCTC 721 CCGTAGAGCT GGGGTACCGG GTCACTGCTG AAGACCTGGA CTGGGAGAAG GAGGCGGCAT 781 TCCAGTGCAT CAAGAGTGCA CTGCAGGTTG AGGACAAGGC CATCTCAGAC TGCAGACCCT 841 CACGGCCTTC CCACACTTTG TCCTCACTTG CAACAGGGGC TTCTGGTCTG CCTGCCGTTT 901 CTAAAGCACC CAGTATGGAT GCACAGCAGG AGAGACACAA GTCCCAAGAC TGCCTGGGCC 961 TAGTGGCCCC CCTAGCATCT GCTACAGAGG TCCCCTCTAC AGCTCCCATG TCTGGGGAGA 1021 AGCACAGACC ACCAGGCCCC CTGTTCTCCT CCTCAGATCC CCTTCCTGCC ACCTCTTCCC 1081 ACTCCCAGGA CTCAGCCCAG GTCACCTCGC TGATTCCTGC CCCCTTCCCA GCTGCAAGCA 1141 TGGATGCGGG CATGAGAAGA ACAAGGCCTG GCACTTCTGC TCCTGCAGCT GCCGCAGCAG 1201 CCCCTCCCCC CTCCACATTG AACCGCACAT TGGGGTCACT ATTGGAGTGG ATGGAGGCCC 1261 TTCACATTTC TGGGCCTCAG CCACAGCTGC AGCAGGTGCC CAGAGGTCAG AACCAGAGAT 1321 CCCAGACCTC CCGGACCAGC TCGTGCCCCA AATTGCCAAC TTTCTTGTAC AAAGTtggca 1381 ttataagaaa gcattgctta tcaatttgtt gcaacgaac