Construct: ORF ccsbBroad304_10587

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009081.1_s304c1, BRDN0000408608
Derived from:
ccsbBroadEn_10587
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POM121L4P (266697)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10587
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102724151 LOC102724151 putative POM121-like protein 1 XM_017030129.2 90.3% 87.6% (many diffs)
2 human 101929738 LOC101929738 putative POM121-like protein 1 XM_017029167.2 90.1% 87.6% (many diffs)
3 human 102724728 LOC102724728 POM121 transmembrane nucleo... NR_136575.1 66.6% (many diffs)
4 human 266697 POM121L4P POM121 transmembrane nucleo... NR_024592.1 59% (many diffs)
5 human 102724151 LOC102724151 putative POM121-like protein 1 XR_002958853.1 58.1% (many diffs)
6 human 102724151 LOC102724151 putative POM121-like protein 1 XR_001756147.2 49.9% (many diffs)
7 human 112268346 LOC112268346 putative POM121-like protei... XM_024452586.1 44.8% 34.4% (many diffs)
8 human 107987432 LOC107987432 putative POM121-like protei... XM_024452587.1 44.8% 34.4% (many diffs)
9 human 112268347 LOC112268347 putative POM121-like protei... XM_024452588.1 44.8% 34.4% (many diffs)
10 human 100652833 LOC100652833 putative POM121-like protei... XM_011543783.2 39.3% 31.3% (many diffs)
11 human 102724995 LOC102724995 POM121 transmembrane nucleo... NR_160659.1 35.4% (many diffs)
12 human 107987433 LOC107987433 putative POM121-like protei... XM_017030248.1 33.8% 25.1% (many diffs)
13 human 25812 POM121L1P POM121 transmembrane nucleo... NR_024591.1 31.3% (many diffs)
14 human 112268330 LOC112268330 putative POM121-like protei... XR_002958928.1 26.1% (many diffs)
15 human 646652 LOC646652 integral membrane glycoprot... NR_157803.1 25.6% (many diffs)
16 human 29774 POM121L9P POM121 transmembrane nucleo... NR_003714.1 23.9% (many diffs)
17 human 101929599 LOC101929599 putative POM121-like protei... NR_157804.1 23.7% (many diffs)
18 human 441081 LOC441081 POM121 membrane glycoprotei... NR_073404.1 22.2% (many diffs)
19 human 29797 POM121L8P POM121 transmembrane nucleo... NR_024583.1 16.2% (many diffs)
20 human 646074 POM121L10P POM121 transmembrane nucleo... NR_024593.1 13% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1353
ORF length:
1284
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggactctctg tggggcccag gagctgggag tcaccccttt ggggtccaca
121acagccggct gtccccagac ttgtgtccag ggaagatagt gttgagggcc ctcaaggaga
181gcggggcagg gatgcctgag caggacaagg accctagagt ccaagagaat cctggtgatc
241agagaagggt ccccgaggtc accggggatg caccgtctgc atttcggccc ctgcgggaca
301atggaggcct ctctcccttt gtgcccgggc ccgggcctct gcagacagac ctccatgccc
361agaggtcaga aatcagatat aaccagacat cccagacctc ctggacgagc tcctgcacca
421accgaaatgc catctccagc tcctacagct ccacgggagg cttgccgggg ctaaagcgga
481ggagggggcc agcctcatcc cactgccagc tgaccctcag ttcctcaaag acagtgagtg
541aggacaggcc tcaggctgtc tcttcgggtc acacccagtg tgaaaaggtg gcagagatag
601caccagggca gacactcgcc ctcaggaatg actcctccag atccgaggcc tctaggccca
661gtacacgcaa gtttcccctg ctgccacgca ggcgagggga gcctttgatg ctgccacctc
721ccgtagagct ggggtaccgg gtcactgctg aagacctgga ctgggagaag gaggcggcat
781tccagtgcat caagagtgca ctgcaggttg aggacaaggc catctcagac tgcagaccct
841cacggccttc ccacactttg tcctcacttg caacaggggc ttctggtctg cctgccgttt
901ctaaagcacc cagtatggat gcacagcagg agagacacaa gtcccaagac tgcctgggcc
961tagtggcccc cctagcatct gctacagagg tcccctctac agctcccatg tctggggaga
1021agcacagacc accaggcccc ctgttctcct cctcagatcc ccttcctgcc acctcttccc
1081actcccagga ctcagcccag gtcacctcgc tgattcctgc ccccttccca gctgcaagca
1141tggatgcggg catgagaaga acaaggcctg gcacttctgc tcctgcagct gccgcagcag
1201cccctccccc ctccacattg aaccgcacat tggggtcact attggagtgg atggaggccc
1261ttcacatttc tgggcctcag ccacagctgc agcaggtgcc cagaggtcag aaccagagat
1321cccagacctc ccggaccagc tcgtgcccca aattgccaac tttcttgtac aaagtggttg
1381gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1441accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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