Transcript: Human XR_241506.4

PREDICTED: Homo sapiens transient receptor potential cation channel subfamily C member 1 (TRPC1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRPC1 (7220)
Length:
3802
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_241506.4
NBCI Gene record:
TRPC1 (7220)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_241506.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296826 TGCGACAAGGGTGACTATTAT pLKO_005 214 3UTR 100% 15.000 21.000 N TRPC1 n/a
2 TRCN0000305058 TGCGACAAGGGTGACTATTAT pLKO_005 214 3UTR 100% 15.000 21.000 N Trpc1 n/a
3 TRCN0000305050 AGCTGTTGATATACTACTTAA pLKO_005 423 3UTR 100% 13.200 18.480 N Trpc1 n/a
4 TRCN0000070033 CCGAAATGAAATAAGGGATTT pLKO.1 2080 3UTR 100% 10.800 15.120 N Trpc1 n/a
5 TRCN0000044000 GCTCATCGTAACAACTATGAA pLKO.1 550 3UTR 100% 5.625 7.875 N TRPC1 n/a
6 TRCN0000291283 GCTCATCGTAACAACTATGAA pLKO_005 550 3UTR 100% 5.625 7.875 N TRPC1 n/a
7 TRCN0000044001 GCATCGTTACTTGACTTCCAT pLKO.1 1984 3UTR 100% 3.000 4.200 N TRPC1 n/a
8 TRCN0000296818 CTAAATCATGGAGCGAATAAT pLKO_005 2157 3UTR 100% 15.000 12.000 N TRPC1 n/a
9 TRCN0000043998 GCCCACCTGTAAGAAGATAAT pLKO.1 1086 3UTR 100% 13.200 9.240 N TRPC1 n/a
10 TRCN0000291284 GCCCACCTGTAAGAAGATAAT pLKO_005 1086 3UTR 100% 13.200 9.240 N TRPC1 n/a
11 TRCN0000043999 GCTACTTTGATGACAAATGTA pLKO.1 1776 3UTR 100% 5.625 3.938 N TRPC1 n/a
12 TRCN0000044002 GCTAAGGATTTACTTGCACAA pLKO.1 856 3UTR 100% 4.050 2.835 N TRPC1 n/a
13 TRCN0000291227 GCTAAGGATTTACTTGCACAA pLKO_005 856 3UTR 100% 4.050 2.835 N TRPC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_241506.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01713 pDONR223 100% 48.7% None (many diffs) n/a
2 ccsbBroad304_01713 pLX_304 0% 48.7% V5 (many diffs) n/a
3 TRCN0000468696 TTCATTGTTAAATCCATGTTCTCC pLX_317 18.6% 48.7% V5 (many diffs) n/a
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