Transcript: Human XR_247042.3

PREDICTED: Homo sapiens pecanex 2 (PCNX2), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PCNX2 (80003)
Length:
4154
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_247042.3
NBCI Gene record:
PCNX2 (80003)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_247042.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276038 ATCTTGTACCCAGCGCTAATT pLKO_005 3637 3UTR 100% 13.200 18.480 N PCNX2 n/a
2 TRCN0000276036 GCAACCCGGTTTACCAGTTTA pLKO_005 3773 3UTR 100% 13.200 18.480 N PCNX2 n/a
3 TRCN0000157915 CCACCTGTCTTTGTCTCAGTA pLKO.1 828 3UTR 100% 4.950 6.930 N PCNX2 n/a
4 TRCN0000156490 CTGAGAGTCAAGATCCGTCTT pLKO.1 2315 3UTR 100% 4.050 3.240 N PCNX2 n/a
5 TRCN0000276039 CTGAGAGTCAAGATCCGTCTT pLKO_005 2315 3UTR 100% 4.050 3.240 N PCNX2 n/a
6 TRCN0000276037 TCCCTGTTAGAATCCATTAAT pLKO_005 1798 3UTR 100% 15.000 10.500 N PCNX2 n/a
7 TRCN0000275989 ATATAGCAGACCAATCTATTT pLKO_005 2769 3UTR 100% 13.200 9.240 N PCNX2 n/a
8 TRCN0000155645 CACAGAGAAGACCAGTGTAAA pLKO.1 1257 3UTR 100% 13.200 9.240 N PCNX2 n/a
9 TRCN0000158306 CCTTGACCCATCGTCTTGTAA pLKO.1 1596 3UTR 100% 5.625 3.938 N PCNX2 n/a
10 TRCN0000154367 CCATCAAGGATCACAGTTCTT pLKO.1 1490 3UTR 100% 4.950 3.465 N PCNX2 n/a
11 TRCN0000157244 CGAGATAACTGTTCCCAGGAA pLKO.1 1888 3UTR 100% 2.640 1.848 N PCNX2 n/a
12 TRCN0000155764 CCCAAACTCCATGACAGATTT pLKO.1 1206 3UTR 100% 13.200 7.920 N PCNX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_247042.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12655 pDONR223 100% 21.4% None (many diffs) n/a
2 ccsbBroad304_12655 pLX_304 0% 21.4% V5 (many diffs) n/a
3 TRCN0000472368 AAGGAGGCGGTTGGACATCAGCGT pLX_317 45.1% 21.4% V5 (many diffs) n/a
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