Transcript: Mouse XR_373388.3

PREDICTED: Mus musculus ADP-ribosylation factor 1 pseudogene (LOC102632770), misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
LOC102632770 (102632770)
Length:
1748
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_373388.3
NBCI Gene record:
LOC102632770 (102632770)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_373388.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000100371 GCAGGGAAGACAACAATTCTA pLKO.1 155 3UTR 100% 5.625 2.813 Y Arf1 n/a
2 TRCN0000324832 GCAGGGAAGACAACAATTCTA pLKO_005 155 3UTR 100% 5.625 2.813 Y Arf1 n/a
3 TRCN0000100372 AGGACTAGATTGGCTGTCTAA pLKO.1 574 3UTR 100% 4.950 2.475 Y Arf1 n/a
4 TRCN0000324918 AGGACTAGATTGGCTGTCTAA pLKO_005 574 3UTR 100% 4.950 2.475 Y Arf1 n/a
5 TRCN0000039876 CAATGACAGAGAGCGTGTGAA pLKO.1 347 3UTR 100% 4.950 2.475 Y ARF1 n/a
6 TRCN0000288643 CAATGACAGAGAGCGTGTGAA pLKO_005 347 3UTR 100% 4.950 2.475 Y ARF1 n/a
7 TRCN0000100370 CCCATCTCCATGTGTGAAGTA pLKO.1 1455 3UTR 100% 4.950 2.475 Y Arf1 n/a
8 TRCN0000324833 CCCATCTCCATGTGTGAAGTA pLKO_005 1455 3UTR 100% 4.950 2.475 Y Arf1 n/a
9 TRCN0000100373 GATGCTGTTCTCTTGGTGTTT pLKO.1 417 3UTR 100% 4.950 2.475 Y Arf1 n/a
10 TRCN0000324834 GATGCTGTTCTCTTGGTGTTT pLKO_005 417 3UTR 100% 4.950 2.475 Y Arf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_373388.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00094 pDONR223 100% 27.3% None (many diffs) n/a
2 ccsbBroad304_00094 pLX_304 0% 27.3% V5 (many diffs) n/a
3 TRCN0000470051 AGACATCCAACAGCAAGTTGGGTG pLX_317 77.4% 27.3% V5 (many diffs) n/a
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