Transcript: Mouse XR_379851.1

PREDICTED: Mus musculus myelin-associated oligodendrocytic basic protein (Mobp), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mobp (17433)
Length:
2506
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_379851.1
NBCI Gene record:
Mobp (17433)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_379851.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000089740 TGCCTGCCAGAAGACTAGATT pLKO.1 380 3UTR 100% 5.625 7.875 N Mobp n/a
2 TRCN0000089739 GCTCTCCAAGAACCAGAAGTT pLKO.1 224 3UTR 100% 4.950 3.465 N Mobp n/a
3 TRCN0000089741 CCAGAAGTTCTCCGAGCACTT pLKO.1 236 3UTR 100% 4.050 2.835 N Mobp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_379851.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01027 pDONR223 100% 8.4% None (many diffs) n/a
2 ccsbBroad304_01027 pLX_304 0% 8.4% V5 (many diffs) n/a
3 TRCN0000467672 CTTTGCTCACATTTCAGAGTCAAA pLX_317 100% 8.4% V5 (many diffs) n/a
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