Transcript: Mouse XR_387061.3

PREDICTED: Mus musculus predicted gene 14957 (Gm14957), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm14957 (100040410)
Length:
829
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_387061.3
NBCI Gene record:
Gm14957 (100040410)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_387061.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000090731 GCTATTGCTAGCACCTTTATT pLKO.1 565 3UTR 100% 15.000 7.500 Y LOC434847 n/a
2 TRCN0000091154 CAGAGGAACTGCATAAGAATA pLKO.1 506 3UTR 100% 13.200 6.600 Y LOC434837 n/a
3 TRCN0000090693 CCCTTCCAGAATGGCGAATTT pLKO.1 248 3UTR 100% 13.200 6.600 Y Gm14957 n/a
4 TRCN0000091121 CAACCTTGTTCCTTTGGATAT pLKO.1 396 3UTR 100% 10.800 5.400 Y Cldn34c3 n/a
5 TRCN0000090696 CCATTACTACACCTGCCATAA pLKO.1 375 3UTR 100% 10.800 5.400 Y Gm14957 n/a
6 TRCN0000091202 CACAGAGGAACTGCATAAGAA pLKO.1 504 3UTR 100% 5.625 2.813 Y LOC433972 n/a
7 TRCN0000091199 CAGCAAGGAAGAGGTATCTTT pLKO.1 621 3UTR 100% 5.625 2.813 Y LOC433972 n/a
8 TRCN0000090695 CCAGCAAGGAAGAGGTATCTT pLKO.1 620 3UTR 100% 5.625 2.813 Y Gm14957 n/a
9 TRCN0000090694 CCTGAGAGATTGCCATTACTA pLKO.1 363 3UTR 100% 5.625 2.813 Y Gm14957 n/a
10 TRCN0000090813 GCAGCATACATAACCTTGAAA pLKO.1 809 3UTR 100% 5.625 2.813 Y LOC434834 n/a
11 TRCN0000090929 GCCATGGGATTGGCATACATA pLKO.1 694 3UTR 100% 5.625 2.813 Y Cldn34c1 n/a
12 TRCN0000090932 CATAATGTGCAATACCTCTAT pLKO.1 225 3UTR 100% 4.950 2.475 Y Cldn34c1 n/a
13 TRCN0000091200 CCAAATAAGAGGTTTCACTTT pLKO.1 189 3UTR 100% 4.950 2.475 Y LOC433972 n/a
14 TRCN0000091201 GAGGTTTCACTTTAGCTACAA pLKO.1 197 3UTR 100% 4.950 2.475 Y LOC433972 n/a
15 TRCN0000091157 GCCACCACAACCACAACTCAA pLKO.1 338 3UTR 100% 4.950 2.475 Y LOC434837 n/a
16 TRCN0000090697 GCGAATTTGCTACTTGAACAA pLKO.1 261 3UTR 100% 4.950 2.475 Y Gm14957 n/a
17 TRCN0000091156 CCACATATTTGATGCCAGCAT pLKO.1 141 3UTR 100% 2.640 1.320 Y LOC434837 n/a
18 TRCN0000090728 CCTGCTAAACAAGTCTGCCAA pLKO.1 165 3UTR 100% 2.640 1.320 Y LOC434847 n/a
19 TRCN0000090732 GAAGAGGTATCTTTCCTGCAA pLKO.1 628 3UTR 100% 2.640 1.320 Y LOC434847 n/a
20 TRCN0000091120 GCCCTTCCAGAATGGCGAAAT pLKO.1 247 3UTR 100% 10.800 5.400 Y Cldn34c3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_387061.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.