Transcript: Mouse XR_870905.2

PREDICTED: Mus musculus predicted gene 7866 (Gm7866), misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm7866 (665964)
Length:
561
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_870905.2
NBCI Gene record:
Gm7866 (665964)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_870905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086703 CCCAGTGACACCATCAAGAAT pLKO.1 178 3UTR 100% 5.625 3.375 N LOC333475 n/a
2 TRCN0000086707 TGACACCATCAAGAATGTCAA pLKO.1 183 3UTR 100% 0.495 0.297 N LOC333475 n/a
3 TRCN0000347704 GACCAGCAGAGGCTGATATTC pLKO_005 238 3UTR 100% 13.200 6.600 Y Gm11808 n/a
4 TRCN0000271956 CCGACTACAACATCCAGAAAG pLKO_005 293 3UTR 100% 10.800 5.400 Y Gm11808 n/a
5 TRCN0000087138 CCAGAAGTACAACTGTGACAA pLKO.1 381 3UTR 100% 4.950 2.475 Y Uba52 n/a
6 TRCN0000087142 TCCGACTACAACATCCAGAAA pLKO.1 292 3UTR 100% 4.950 2.475 Y Uba52 n/a
7 TRCN0000347701 TTCGTCAGCTTGCCCAGAAGT pLKO_005 368 3UTR 100% 4.950 2.475 Y Gm11808 n/a
8 TRCN0000271957 CAAGATGATCTGCCGCAAGTG pLKO_005 399 3UTR 100% 4.050 2.025 Y Gm11808 n/a
9 TRCN0000087140 GCCAAGATCCAAGACAAGGAA pLKO.1 205 3UTR 100% 3.000 1.500 Y Uba52 n/a
10 TRCN0000086705 GATCCAAGACAAGGAAGGCAT pLKO.1 210 3UTR 100% 2.640 1.320 Y LOC333475 n/a
11 TRCN0000087141 CCGCAAGTGCTACGCACGCCT pLKO.1 411 3UTR 100% 0.000 0.000 Y Uba52 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_870905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01732 pDONR223 100% 59.4% None (many diffs) n/a
2 ccsbBroad304_01732 pLX_304 0% 59.4% V5 (many diffs) n/a
3 TRCN0000479679 GCATCGCTGTTGTTTGACTCTTAG pLX_317 87.9% 59.4% V5 (many diffs) n/a
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