Construct: ORF ccsbBroadEn_01732

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009966.1_s300c1, BRDN0000456847
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBA52 (7311)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001033930.3 100% 100%
2 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321017.1 100% 100%
3 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321018.2 100% 100%
4 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321019.2 100% 100%
5 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321020.2 100% 100%
6 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_003333.5 100% 100%
7 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321021.1 94.8% 94.8% 1_21del
8 human 7311 UBA52 ubiquitin A-52 residue ribo... XM_005260052.2 82% 82% 294_377del
9 human 7311 UBA52 ubiquitin A-52 residue ribo... XM_005260053.3 82% 82% 294_377del
10 human 7311 UBA52 ubiquitin A-52 residue ribo... XM_005260054.2 82% 82% 294_377del
11 human 7311 UBA52 ubiquitin A-52 residue ribo... XM_006722871.2 82% 82% 294_377del
12 human 7311 UBA52 ubiquitin A-52 residue ribo... NM_001321022.2 77.3% 77.3% 102_103ins87
13 human 7311 UBA52 ubiquitin A-52 residue ribo... XM_017027198.1 63% 63% 1_141del;435_518del
14 human 7314 UBB ubiquitin B NM_018955.4 40.8% 27.1% (many diffs)
15 human 7316 UBC ubiquitin C NM_021009.7 15.1% 10.3% (many diffs)
16 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348227.1 90.3% 100% (many diffs)
17 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348228.1 90.3% 100% (many diffs)
18 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_001348229.1 90.3% 100% (many diffs)
19 mouse 22186 Uba52 ubiquitin A-52 residue ribo... NM_019883.4 90.3% 100% (many diffs)
20 mouse 665964 Gm7866 predicted gene 7866 XR_870905.2 59.4% (many diffs)
21 mouse 629750 Gm11517 predicted gene 11517; ubiqu... NR_033523.1 50.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
453
ORF length:
384
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGATCTTT GTGAAGACCC TCACTGGCAA AACCATCACC CTTGAGGTCG
121AGCCCAGTGA CACCATTGAG AATGTCAAAG CCAAAATTCA AGACAAGGAG GGTATCCCAC
181CTGACCAGCA GCGTCTGATA TTTGCCGGCA AACAGCTGGA GGATGGCCGC ACTCTCTCAG
241ACTACAACAT CCAGAAAGAG TCCACCCTGC ACCTGGTGTT GCGCCTGCGA GGTGGCATTA
301TTGAGCCTTC TCTCCGCCAG CTTGCCCAGA AATACAACTG CGACAAGATG ATCTGCCGCA
361AGTGCTATGC TCGCCTTCAC CCTCGTGCTG TCAACTGCCG CAAGAAGAAG TGTGGTCACA
421CCAACAACCT GCGTCCCAAG AAGAAGGTCA AATTGCCAAC TTTCTTGTAC AAAGTTGGca
481ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)