Transcript: Human XR_922657.3

PREDICTED: Homo sapiens ATPase H+ transporting V1 subunit C2 (ATP6V1C2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATP6V1C2 (245973)
Length:
2817
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_922657.3
NBCI Gene record:
ATP6V1C2 (245973)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_922657.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425104 ACCCGGACACTGAGTGATATT pLKO_005 590 3UTR 100% 13.200 18.480 N ATP6V1C2 n/a
2 TRCN0000418951 TTCATGTCTTAACGGCTATTT pLKO_005 2511 3UTR 100% 13.200 18.480 N ATP6V1C2 n/a
3 TRCN0000043133 CCCTCGATCAACCAAACTCAT pLKO.1 730 3UTR 100% 4.950 6.930 N ATP6V1C2 n/a
4 TRCN0000043134 GCAACTCAATAACCAAGACTA pLKO.1 2173 3UTR 100% 4.950 6.930 N ATP6V1C2 n/a
5 TRCN0000101541 CCTTTGCTGAAAGCCTCATAA pLKO.1 261 3UTR 100% 13.200 10.560 N Atp6v1c2 n/a
6 TRCN0000043136 GCGTTTAAGAGAGGTTCTAAA pLKO.1 2080 3UTR 100% 13.200 10.560 N ATP6V1C2 n/a
7 TRCN0000043135 CCCAAACCAAACTACTCACAA pLKO.1 671 3UTR 100% 4.950 3.465 N ATP6V1C2 n/a
8 TRCN0000412918 CCTTATGTCTACTTCCATATT pLKO_005 2198 3UTR 100% 13.200 7.920 N ATP6V1C2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_922657.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09890 pDONR223 100% 40.5% None (many diffs) n/a
2 ccsbBroad304_09890 pLX_304 0% 40.5% V5 (many diffs) n/a
3 TRCN0000466525 ACCTGACCATGTGGGCGGTTTGAG pLX_317 22.2% 40.5% V5 (many diffs) n/a
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