Construct: ORF TRCN0000465445

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001057.1_s317c1
Derived from:
ccsbBroadEn_10841
DNA Barcode:
GTGGGTAACAGGAGCAGAAACGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GBP3 (2635)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465445
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2635 GBP3 guanylate binding protein 3 NM_001319181.1 53.2% 53.3% 870_1632delinsC
2 human 2635 GBP3 guanylate binding protein 3 XM_006710574.3 50.9% 51% 870_1704delinsC
3 human 2635 GBP3 guanylate binding protein 3 XM_011541234.2 50.2% 43.8% (many diffs)
4 human 2635 GBP3 guanylate binding protein 3 NM_018284.3 48.6% 48.7% 870_1785delinsC
5 human 2633 GBP1 guanylate binding protein 1 NM_002053.3 45.8% 45.6% (many diffs)
6 human 2635 GBP3 guanylate binding protein 3 NM_001319179.1 35.4% 35.4% 0_1ins237;633_1548delinsC
7 human 2635 GBP3 guanylate binding protein 3 XM_005270743.2 35.4% 35.4% 0_1ins237;633_1548delinsC
8 human 2635 GBP3 guanylate binding protein 3 XM_011541233.1 35.4% 35.4% 0_1ins237;633_1548delinsC
9 human 2635 GBP3 guanylate binding protein 3 NR_135007.1 34% 1_205del;1076_2557del
10 human 2635 GBP3 guanylate binding protein 3 NM_001319180.1 25.6% 25% (many diffs)
11 human 2635 GBP3 guanylate binding protein 3 XM_017001013.1 25.6% 25% (many diffs)
12 human 2633 GBP1 guanylate binding protein 1 XM_024446351.1 24.4% 23.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
936
ORF length:
870
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tccagagatc cacatgacag gcccaatgtg cctcattgag aacactaatg
121gggaactggt ggcgaatcca gaagctctga aaatcctgtc tgccattaca cagcctgtgg
181tggtggtggc aattgtgggc ctctaccgca caggaaaatc ctacctgatg aacaagctag
241ctgggaagaa taagggcttc tctctgggct ccacagtgaa atctcacacc aaaggaatct
301ggatgtggtg tgtgcctcac cccaaaaagc cagaacacac cttagtcctg cttgacactg
361agggcctggg agatgtaaag aagggtgaca accagaatga ctcctggatc ttcaccctgg
421ccgtcctcct gagcagcact ctcgtgtaca atagcatggg aaccatcaac cagcaggcta
481tggaccaact gtactatgtg acagagctga cacatcgaat ccgatcaaaa tcctcacctg
541atgagaatga gaatgaggat tcagctgact ttgtgagctt cttcccagat tttgtgtgga
601cactgagaga tttctccctg gacttggaag cagatggaca acccctcaca ccagatgagt
661acctggagta ttccctgaag ctaacgcaag gtaccagtca aaaagataaa aattttaatc
721tgccccgact CTGTATCCGG AAGTTCTTCC CAAAGAAAAA ATGTTTTGTC TTCGATCTGC
781CCATTCACCG CAGGAAGCTT GCCCAGCTTG AGAAACTACA AGATGAAGAG CTGGACCCTG
841AATTTGTGCA ACAAGTAGCA GACTTCTGTT CCTACATCTT TAGCAATTCC AAAACTAAAA
901CTCTTTCAGG AGGCATCAAG GTCAATGGGC CTCGCTGCCC AACTTTCTTG TACAAAGTGG
961TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1021CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1081AGTGGGTAAC AGGAGCAGAA ACGGGACGCG TTAAGTCgac aatcaacctc tggattacaa
1141aatttgtgaa agatt

Download FASTA (ORF) (Full)